PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g065620.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 329aa MW: 37462.4 Da PI: 8.3929

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g065620.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.2	7.2e-33	184	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYe++Hnh+ Csa11g065620.1 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHP 241 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	1.8E-108	1	328	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	3.3E-34	168	243	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-29	175	243	IPR003657	WRKY domain
PROSITE profile	PS50811	32.282	178	243	IPR003657	WRKY domain
SMART	SM00774	6.1E-38	183	242	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	184	241	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MSNEIKDLNN YNYTPSYNHY NINNQNMMMN LPYVSGPSTY NANMISSPQL GFDLPSKNLS 60 PQGAFDLGFE LSPSSSDFFN PSIDQENGLY NAFNYNSSHK SHEVVGGGCA TIKSEVRVSA 120 SPSSSEADHH PREDSGKILK KREAGDGGED DQRSQKVVKT KKKEEKKKEP RVSFMTKTEV 180 DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCNVKKRV ERSYQDPTVV ITTYESQHNH 240 PIPTNRRTAL FSGTTASNYN PSSSPILSDL IMNTPRSFSN DDLFRVPYAS VNVNPNYHQQ 300 QQQGFHQQES EFELLKEMFP SVFFKQEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-28	173	243	7	77	Probable WRKY transcription factor 4
2lex_A	3e-28	173	243	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring stress-responsive cis-acting element. Functions as positive regulator of salt stress response. Binds the W box of LTI78/RD29A stress-response gene and directly regulates its transcription under salt stress. Functions antagonistically with VQ9 to regulate sodium and potassium homeostasis under salt stress by regulating the expression of downstream SOS (SALT OVERLY SENSITIVE) stress-responsive genes. The DNA-binding activity of WRKY8 is decreased by VQ9 (PubMed:23451802). Functions as negative regulator of basal resistance to the bacterial pathogen P. syringae and as positive regulator of resistance to the fungal pathogen to B. cinerea (PubMed:20367464). Functions as positive regulator of defense response againt tobamovirus (TMV) by regulating both the abscisic acid and ethylene signaling pathways. Positively regulates ABI4 expression and negatively modulates ACS6 and ERF104 expression by directly binding to the W box consensus motifs within their promoters (PubMed:23650359). {ECO:0000269\|PubMed:20367464, ECO:0000269\|PubMed:23451802, ECO:0000269\|PubMed:23650359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g065620.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding, abscisic acid (ABA), salicylic acid (SA), H(2)O(2), and infection with P.syringae pv. tomato DC3000 and B.cinerea (PubMed:20367464). Induced by salt stress (PubMed:23451802). {ECO:0000269\|PubMed:20367464, ECO:0000269\|PubMed:23451802}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF404855	0.0	AF404855.1 Arabidopsis thaliana WRKY transcription factor 8 (WRKY8) mRNA, complete cds.
GenBank	AY063916	0.0	AY063916.1 Arabidopsis thaliana unknown protein (At5g46350) mRNA, complete cds.
GenBank	AY096426	0.0	AY096426.1 Arabidopsis thaliana unknown protein (At5g46350) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441593.1	0.0	PREDICTED: probable WRKY transcription factor 8
Swissprot	Q9FL26	0.0	WRKY8_ARATH; WRKY transcription factor 8
TrEMBL	A0A178U9B9	0.0	A0A178U9B9_ARATH; WRKY transcription factor
STRING	XP_010441593.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46350.1	0.0	WRKY DNA-binding protein 8

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sukweenadhi J, et al. Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress. Microbiol. Res., 2015. 172: p. 7-15 [PMID:25721473]