PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g066430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 502aa    MW: 57341.3 Da    PI: 7.2142
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g066430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.32.4e-331672582102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d + ++++swsen++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+  l+++
  Csa11g066430.1 167 FLTKTYEMVDDGSSDSVVSWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFSNDDFVRGRPYLMKN 252
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Csa11g066430.1 253 IHRRKP 258
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-33162256IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-57163256IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.0E-36164256IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-30167256IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18167190IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18205217IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340206230IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-18218230IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MKNIHRRRPV HSHSLVNLQT QKSINGIRET EHGGSNRKIK KGERSFKFVL KKMVVLRFKL  60
ESSDEKTGHD AIRRIARIKG VAFVDFDEEE DDTIIVEGEN LDEQKIRKTL NKFMRDKAKG  120
GGGLEDLFLP IGIESNKSSP VIIIICFEVV KGMDESSHGG SSSLPPFLTK TYEMVDDGSS  180
DSVVSWSENN KSFIVKNPAE FSRDLLPRFF KHKNFSSFIR QLNTYGFRKV DPEKWEFSND  240
DFVRGRPYLM KNIHRRKPVH SHSLVNLQTQ NPLTESERRS MEDRIERLKK EKEGLLVELQ  300
SQEQERKDFE MQVTTLKDRL QQMEQHQKSI VAYVSQVLGK PGLSLNLENH ERRKRRVPES  360
SLPSSRSHVE QVENLESSLT FWENLVSESY EKSGIQSSSS MDLDAAESSL SIGDTRPKSS  420
KIDMNLEPPV TVTVAVAAPK AGVNDDFWEQ CLTENPGSTE QQEVQSERKD VDNDNGDNKI  480
GNQRTFWWNS GNVNNNITEK T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2215925621129Heat shock factor protein 1
5d5v_B2e-2215925621129Heat shock factor protein 1
5d5v_D2e-2215925621129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g066430.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290580.0AK229058.1 Arabidopsis thaliana mRNA for heat shock transcription factor, complete cds, clone: RAFL16-34-M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441676.10.0PREDICTED: heat stress transcription factor A-4c isoform X1
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLR0GR490.0R0GR49_9BRAS; Uncharacterized protein
STRINGXP_010441676.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]