PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g066590.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 239aa    MW: 26313.2 Da    PI: 6.3449
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g066590.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.11.7e-122450127
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekA 27
                    kprlrWt +LH+rFv+av++LGG+++ 
  Csa11g066590.2 24 KPRLRWTADLHDRFVDAVAKLGGADRS 50
                    79**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-112150IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-72449IPR006447Myb domain, plants
PfamPF143793.2E-1982127IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MERVNLGGLG YDNGGGVMMT RDPKPRLRWT ADLHDRFVDA VAKLGGADRS SYVHFDNCSQ  60
GGISNESRFD NGHHRQSGNV PFAEAMRHQV DAQQRFQEQL EVQKRLQMRM EAQGKYLLTL  120
LEKAQKSIPC GNNNAAETDD KGHFSDFNLA LSGLVGDDHK SHKAVGLVTD NISQLNDDFR  180
LCGDQEKIET GGDAGVIKPE SGFVHFDLNS KSGFDLLTSA NYGIEMKPNV IANRHPQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g066590.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937771e-136AB493777.1 Arabidopsis thaliana At5g45580 mRNA for hypothetical protein, partial cds, clone: RAAt5g45580.
GenBankBT0120031e-136BT012003.1 Arabidopsis thaliana At5g45580 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441698.11e-159PREDICTED: myb family transcription factor PHL11-like
SwissprotC0SVS41e-125PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLR0GD261e-130R0GD26_9BRAS; Uncharacterized protein
STRINGXP_010441698.11e-159(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-117G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]