PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g071760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 200aa    MW: 22483.1 Da    PI: 6.0194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g071760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-101481881055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN ++ +L++l+P+      +K++ +++Le Av+Y+k Lq
  Csa11g071760.1 148 RKRRERINGRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 188
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.373138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11143195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13143196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-11147192No hitNo description
PfamPF000104.2E-8148188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MENGALVDGE YESLLGIFNF DQCSSDDTSF YNAPSEIDAF SSDEFFPFGT SLKRNYPAVL  60
DGSNYQMNLY VDSRQEQMKP MKKQKLSSEN NLVTEPNTAW RDGQSLSRFN SSDDEKALGL  120
TANTSKSLTR KAKPNKRIAS DPQSLYARKR RERINGRLKT LQSLVPNGTK VDISTMLEDA  180
VHYVKFLQLQ IKLLSSDDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g071760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230303e-48AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBankCP0026883e-48CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088044.11e-146PREDICTED: transcription factor bHLH139-like isoform X2
SwissprotQ3E7L71e-115BH139_ARATH; Transcription factor bHLH139
TrEMBLA0A178UKI51e-113A0A178UKI5_ARATH; Uncharacterized protein
STRINGXP_010494289.11e-128(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.11e-118bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]