PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g072230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 228aa    MW: 26330.2 Da    PI: 9.5423
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g072230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.56.5e-2863117358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     k +Y eC+kNhAa++G++a+DGCgEf+++  ee + ++l+CaACgCHRnFHR e  
  Csa11g072230.1  63 KPHYGECRKNHAADIGTTAYDGCGEFVTA-AEEEEDQSLNCAACGCHRNFHREELI 117
                     679*************************9.555699****************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-2465115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.3E-2765115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1866117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.09566115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-20155226IPR009057Homeodomain-like
SuperFamilySSF466892.93E-12164226IPR009057Homeodomain-like
PROSITE profilePS500718.503166227IPR001356Homeobox domain
TIGRFAMsTIGR015655.1E-31169225IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDEIKPKEAE KLKRRRNVKP ICRETGDHVH YPPPTTRKPK SKPTRTHHAP PPILESIFKV  60
THKPHYGECR KNHAADIGTT AYDGCGEFVT AAEEEEDQSL NCAACGCHRN FHREELITDN  120
GVAETVLEVL KISSLQFRQI FCSPYGGGKS KAKKKKEEKG EDLVEKRVKR LKTKFTAEQT  180
EKMKDYAEKL RWKVRPEMRD EVEEFCVEIG VNRKKFKIWM NNHKDKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-131682251774ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g072230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442119.11e-169PREDICTED: zinc-finger homeodomain protein 13-like
SwissprotQ9FMY71e-116ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLA0A0G4NSG51e-113A0A0G4NSG5_ARATH; Homeobox protein 27
TrEMBLA0A384L2F91e-113A0A384L2F9_ARATH; ZHD13
STRINGXP_010442119.11e-168(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.11e-108homeobox protein 27