PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g072340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 175aa    MW: 19789.8 Da    PI: 9.7139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g072340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.3e-14911621796
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      lp +f+++h gk+ +   +tl de+g+++e  +    k+ +  l++GW +F+ a++L  gD+++F+l++++ f  +v +
  Csa11g072340.1  91 GLPVQFCRSHLGKHDG--VITLIDEEGEEYEAIH--LAKRTG--LSGGWMGFAIAHNLAYGDTLIFELVRSTAF--KVYI 162
                     59********666544..7***************..555544..************************998888..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.0E-1475166IPR003340B3 DNA binding domain
PROSITE profilePS5086310.82875166IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1789165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1491164IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-1091163IPR003340B3 DNA binding domain
CDDcd100171.64E-1692164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVVAKQSNYE EFRLKRVEEN KKRMEALNLP KLCQNLNPTS LKTSPMKKRC IPRTPEKAEK  60
QMVDLQRVLN RRREFLAFPA QEHHSGFVSK GLPVQFCRSH LGKHDGVITL IDEEGEEYEA  120
IHLAKRTGLS GGWMGFAIAH NLAYGDTLIF ELVRSTAFKV YITRVGSSGE SSEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g072340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076473e-57AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBankCP0026883e-57CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481963.12e-97PREDICTED: B3 domain-containing protein At5g42700-like isoform X3
SwissprotQ9FMZ42e-83Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLD7MRH42e-85D7MRH4_ARALL; Transcriptional factor B3 family protein
STRINGXP_010445903.11e-104(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-85B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]