PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g078530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 478aa    MW: 53721.9 Da    PI: 5.83
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g078530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.21.8e-23222275155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W  eLH++F++av+ L G+ kA+Pk+ile+m+v+ +++e+v+SHLQk+R+
  Csa11g078530.1 222 KRRVVWDGELHKKFLDAVNCL-GPIKAVPKKILEIMNVENISRENVASHLQKFRM 275
                     689******************.9*******************************7 PP
2Response_reg48.35.5e-17421491108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++p+ + +l++ l++ +y +v+++++  ea+ ll++++  +D+ ++  + ++ d ++ ++ei +e  +l ii+++  ++ + +++ ++ G
  Csa11g078530.1  42 VLVFDEDPAYLLILERHLQEFQY-QVTTCTEEGEAISLLRNNKnrFDIAMIQANNSNGDRIRYISEIGSET-DLAIIMISKDDSIQSVVKWISTG 134
                     7999*******************.99999999*******888778**********************7777.8********************** PP

                     ESEEEESS--HHHHH CS
    Response_reg  94 akdflsKpfdpeelv 108
                     a d+l Kp+ pe+l+
  Csa11g078530.1 135 AIDYLIKPIRPEDLR 149
                     *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.11E-2138166IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-2039180No hitNo description
SMARTSM004484.1E-640152IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.48741156IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-1142149IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.81E-1143160No hitNo description
SuperFamilySSF466891.59E-15220279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-22220279IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-22222275IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MAVTLDPGGV PSSDDGGGRP NRDHPNNISD MFPSNFPEGL RVLVFDEDPA YLLILERHLQ  60
EFQYQVTTCT EEGEAISLLR NNKNRFDIAM IQANNSNGDR IRYISEIGSE TDLAIIMISK  120
DDSIQSVVKW ISTGAIDYLI KPIRPEDLRI IFKHVVKKML GRRSLVTVEA EEKAAGEKSS  180
SVGDSTIRNP NKRTSSSSPN AEVNEEDHND DDRVCASSSK KKRRVVWDGE LHKKFLDAVN  240
CLGPIKAVPK KILEIMNVEN ISRENVASHL QKFRMGVKKE NEKIKNEETT NLSLLTPQEG  300
IMYVGADASQ YFREKNFQLP THHVNNSPQP SYVPQHTTNP NNLIPSLEHH YDEAFVAVSG  360
GGLVMDHQYD HHHHHHHQTS DFTLEETIGY NNFQEEEPTV ASLMWTPNPE QIKLYPCQLE  420
LTSLEMRNDH EAGTSSSMLH LPRLISSPHA YSLEQHESGG FSYNSDITGS INYNKSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18218279162ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219223KKKRR
2219224KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g078530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087608.10.0PREDICTED: putative two-component response regulator-like APRR4
RefseqXP_023633365.10.0putative two-component response regulator-like APRR4
SwissprotQ9FJ161e-121APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A087G9M41e-137A0A087G9M4_ARAAL; Uncharacterized protein
STRINGXP_010471835.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-111pseudo-response regulator 4