PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g078830.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 415aa MW: 46649.7 Da PI: 7.0486

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g078830.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.6	5.4e-33	235	293	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ C vkk+vers++dp +v +tYeg+H+h+ Csa11g078830.1 235 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVACGVKKRVERSSDDPLIVMTTYEGQHTHP 293 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-33	220	295	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-29	228	295	IPR003657	WRKY domain
PROSITE profile	PS50811	31.732	230	295	IPR003657	WRKY domain
SMART	SM00774	6.7E-40	235	294	IPR003657	WRKY domain
Pfam	PF03106	2.5E-26	236	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEKKIEEDHH HHHHHHHQER QQKEIKNTET KIEHQRRQEQ EQRQQQISQA SSSSNIMANL 60 VTSSDHHHHQ LELAAGNNLS SIFDTSSLPF PYSYFDDQSS NNPNSFLDLL RQDHHFASSS 120 NSSSFSFDAF PLPNNNNNNP FFTDLPLPQA ESSEVVNTAP TSPNSTSFSS SSNEAANDNN 180 NSGKEVTVKD QEEGDQQQDQ KGTTTKPQLK AKKKNQKKAR EARFAFLTKS DIDNLDDGYR 240 WRKYGQKAVK NSPYPRSYYR CTTVACGVKK RVERSSDDPL IVMTTYEGQH THPFPMTPRG 300 HIGMFTSPIL DHGATTASSS SFSIPQPRYL LTQHHQPYNM YNNNSLSMIS RSSSDGTFVN 360 PGPSSSFPGF GYDMSQASTS TSSSIRDHGL LQDILPSQIR SDSVNTQTNE EVKK*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEKKIEEDHH HHHHHHHQER QQKEIKNTET KIEHQRRQEQ EQRQQQISQA SSSSNIMANL  60
VTSSDHHHHQ LELAAGNNLS SIFDTSSLPF PYSYFDDQSS NNPNSFLDLL RQDHHFASSS  120
NSSSFSFDAF PLPNNNNNNP FFTDLPLPQA ESSEVVNTAP TSPNSTSFSS SSNEAANDNN  180
NSGKEVTVKD QEEGDQQQDQ KGTTTKPQLK AKKKNQKKAR EARFAFLTKS DIDNLDDGYR  240
WRKYGQKAVK NSPYPRSYYR CTTVACGVKK RVERSSDDPL IVMTTYEGQH THPFPMTPRG  300
HIGMFTSPIL DHGATTASSS SFSIPQPRYL LTQHHQPYNM YNNNSLSMIS RSSSDGTFVN  360
PGPSSSFPGF GYDMSQASTS TSSSIRDHGL LQDILPSQIR SDSVNTQTNE EVKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	228	295	10	77	Probable WRKY transcription factor 4
2lex_A	3e-26	228	295	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g078830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF442397	0.0	AF442397.1 Arabidopsis thaliana WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
GenBank	AY063870	0.0	AY063870.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.
GenBank	AY091224	0.0	AY091224.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442419.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	0.0	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	V4KQS3	0.0	V4KQS3_EUTSA; Uncharacterized protein
STRING	XP_010442419.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-148	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]