PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g081930.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YC

Protein Properties

Length: 202aa MW: 22023.7 Da PI: 4.185

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g081930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	97	1.5e-30	36	107	1	72
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrr 72 q++ f ++qi++a++ +nhelP arikki+k+d++v+m++ eaP+llskace++i++lt+rswl++ e +++ Csa11g081930.1 36 QIRDFCIEQIGNASNTRNHELPPARIKKIMKSDPNVNMVAGEAPILLSKACEMLIVDLTMRSWLNTVEGTKK 107 7899**************************************************************998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.22E-15	47	107	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	8.9E-23	48	114	IPR009072	Histone-fold
Pfam	PF00808	3.5E-12	55	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MENNADHHQR PLLPRPSFSN PLLSSFYPRP LPYPLQIRDF CIEQIGNASN TRNHELPPAR 60 IKKIMKSDPN VNMVAGEAPI LLSKACEMLI VDLTMRSWLN TVEGTKKDQE IRHLRRSDSC 120 EDLPPGMVIG HPVVGCNGMY FMPPQMQELP AAPGDGEEEE APGDLEEAPG DLEEAAAGDL 180 EEATPDDLEE AAGEVGESSG N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-18	42	107	4	69	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g081930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485030.1	1e-105	PREDICTED: nuclear transcription factor Y subunit C-7-like
Swissprot	Q9FGP8	3e-47	NFYC7_ARATH; Nuclear transcription factor Y subunit C-7
TrEMBL	A0A178UBR1	7e-45	A0A178UBR1_ARATH; NF-YC7
STRING	XP_010485030.1	1e-104	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20210	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50470.1	1e-41	nuclear factor Y, subunit C7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]