PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 158aa    MW: 18028.7 Da    PI: 9.4144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14354255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +++h e Er+RR+++ + ++ Lr+llP  +   ++K s ++ + +A +YIk+Lq
  Csa11g083350.1  3 KMMHRETERQRRQEMATLYASLRSLLPLHF--IKGKRSTSDQVNEAANYIKYLQ 54
                    789*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.91153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-14370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-10358No hitNo description
PfamPF000104.8E-11354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-10367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-6759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEKMMHRETE RQRRQEMATL YASLRSLLPL HFIKGKRSTS DQVNEAANYI KYLQRKTKEL  60
SLRRDELMLL SRGSFLGSSN YDSKEEMEMM SRKNHVVVRQ CLVGVEIVFS SGCRSGQPRF  120
SSVLQVLSEN GLYLLNSISS IVDDGLIYTI QAEVNLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174301e-156AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109521e-156BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
GenBankBT0116401e-156BT011640.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442684.11e-110PREDICTED: transcription factor bHLH36-like
RefseqXP_010442685.11e-110PREDICTED: transcription factor bHLH36-like
SwissprotQ9FLI18e-92BH036_ARATH; Transcription factor bHLH36
TrEMBLD7MRI82e-95D7MRI8_ARALL; Basix helix-loop-helix family protein
STRINGXP_010442684.11e-109(Camelina sativa)
STRINGXP_010442685.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.13e-94bHLH family protein