PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 397aa    MW: 45716 Da    PI: 8.4412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016152175123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ Cg+ ++++ +Lk+H +  H
  Csa11g083650.1 152 YICGVCGRKCKTNLDLKKHFKQlH 175
                     89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10107.4E-572142IPR029060PIN domain-like
PROSITE profilePS5015710.575152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061673.34E-11166306No hitNo description
Gene3DG3DSA:3.40.50.10107.4E-5237301IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSLFCNLIET LYPKPFLSHK SHFFTFSDSK FRNPKLVTFP LHRLRPIKSC LKSASSSEID  60
LVRNKEGVFA PKEKKVVVLW DLDNKPPRGP PYEAARALRK VAEKLGRVVE ISAYANRHAF  120
IHLPHWVVEE RRERRSLDFM ERKGEVTPIE PYICGVCGRK CKTNLDLKKH FKQLHERERQ  180
KKVNRMRSLK GKKRQKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  240
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDRDRALGRH  300
ADLWVPWIGV EKGEIGEKDL IPGKRPLFEE DEVGFSSGDE LFSLSYDEDE RAEMTVESDG  360
FGRFNVSAFA EDEWVEYEGG FALSDSDDDS DDELGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154780.0AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAY0395920.0AY039592.1 Arabidopsis thaliana AT5g52010/MSG15_9 mRNA, complete cds.
GenBankAY0854060.0AY085406.1 Arabidopsis thaliana clone 150246 mRNA, complete sequence.
GenBankAY1294890.0AY129489.1 Arabidopsis thaliana AT5g52010/MSG15_9 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087839.10.0PREDICTED: uncharacterized protein LOC104725708
TrEMBLR0GTZ40.0R0GTZ4_9BRAS; Uncharacterized protein
STRINGXP_010442713.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein