PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g088800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 522aa    MW: 58112.2 Da    PI: 7.4328
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g088800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.9e-31193250260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers  d+ ++ei+Y+g+H+h+k
  Csa11g088800.1 193 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGLITEIIYKGTHDHPK 250
                     8****************************************.***************85 PP
2WRKY104.36.6e-33364422159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+ +prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Csa11g088800.1 364 LDDGYRWRKYGQKVVRGNLNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 422
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.527187251IPR003657WRKY domain
SuperFamilySSF1182901.01E-24190251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-26191251IPR003657WRKY domain
SMARTSM007746.7E-33192250IPR003657WRKY domain
PfamPF031061.4E-23193249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36349424IPR003657WRKY domain
SuperFamilySSF1182905.36E-29356424IPR003657WRKY domain
PROSITE profilePS5081137.287359424IPR003657WRKY domain
SMARTSM007744.3E-38364423IPR003657WRKY domain
PfamPF031061.1E-25365422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDPDDVSNHR KEKESRRDCC GARYKLMSPA KLPISRSSCI TIPPGLSPTS FLESPVLLSN  60
IKAEPSPTTG SLFKPQAVHA SSSPYRGSSS TIHQNIFHEQ HSTDFELRPL PASNMFCAEL  120
DKRTSESPLQ FQSHSLKHSP SSLTEVAASS TEISRPHQTT PSVSDIPERS DPDESAQTSQ  180
NDSKASQPFI LADDGYNWRK YGQKHVKGSE FPRSYYKCTH PNCEVKKLFE RSYDGLITEI  240
IYKGTHDHPK PQPSRRNSGG LVMPAQEERL DKHSSLNGRD EKGSSFYNLP PPLEQNGNPD  300
VSPVSANDDG GDVAMSDKNN DDMDDNDPFS KRRRLDGAME ITPLVKPIRE PRVVVQTLSE  360
VDILDDGYRW RKYGQKVVRG NLNPRSYYKC TATGCPVRKH VERASHDPKA VITTYEGKHN  420
HDVPTARSNN NNHDMSVPRF RPEETTDTIS LNLGVGIASG GPDHPSNEHS HPHQQQQQQH  480
IRPEFIHQTQ TNGTAGFRFV HGPPMGSYYG NSLNAGKNHQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35191424877Probable WRKY transcription factor 4
2lex_A4e-35191424877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330334KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g088800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087085.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GDB80.0R0GDB8_9BRAS; Uncharacterized protein
STRINGXP_010483009.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein