PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g089590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 720aa    MW: 77571.6 Da    PI: 6.4411
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g089590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31294351260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Csa11g089590.1 294 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 351
                     8****************************************.***************85 PP
2WRKY103.89.7e-33514572159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  Csa11g089590.1 514 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 572
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28289352IPR003657WRKY domain
SuperFamilySSF1182905.23E-25291352IPR003657WRKY domain
SMARTSM007741.6E-34293351IPR003657WRKY domain
PROSITE profilePS5081123.25294352IPR003657WRKY domain
PfamPF031066.2E-24294349IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36499574IPR003657WRKY domain
SuperFamilySSF1182901.7E-28506574IPR003657WRKY domain
PROSITE profilePS5081138.136509574IPR003657WRKY domain
SMARTSM007741.8E-37514573IPR003657WRKY domain
PfamPF031069.4E-25515572IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MLAAELKVSV CGCGGCDGVS GSCFSINQVF HQKWVPRSPS PGTLFSSLIG EGNSSKPVLE  60
RELSLNHGQV MAVEEDTTTG NHNNDSSLTN VSRGGLCERI AARAGFNAPR LNTESIRSNT  120
NFSIDSGRRS PCLTISSPGL SPATLLESPV FLTNPMAQPS PTTGKFPFLP GFSSNALSSD  180
NAKDEFFDDI GASFTFQSVS RSSSSFFQGT TEMMSVDYGN YINRSSHQPA EEDVKPGSLN  240
IESSNLYGIQ TDPSNQNKAS DATTNTGLDT VDHQEEEEDQ RRGGDSMVGG APAEDGYNWR  300
KYGQKLVKGS EYPRSYYKCT NPNCQVKKKV ERSREGHITE IIYKGAHNHS KPLPNRRSGM  360
QTDGTEQVEQ QQHQQQQQQQ RDSTPTWVSC NNTQQQGGSN VNNVEEGTTG FEYGNQSGSI  420
QAQTGGHYES GDAVVVVDTS STFSNDEDED DRGTHGSVSL GCDGGGGRGG EGEGEESESK  480
RRKLEAYAAE MSGATRAIRE PRVVVQTTSD VDILDDGYRW RKYGQKVVKG NPNPRSYYKC  540
TAPGCTVRKH VERASHDLKS VITTYEGKHN HDVPAARNSS HGGGGTSNGS SGGLAAQSHH  600
YHNGHHHSEQ PRGRFERQVT ATNQSPYGRG PFSFQPHLGP PSGYAFGLGQ TGLANLSIPG  660
LAFGQGKMPG LPHPYMTQPS VGNISEAMMQ RGGMEPKAEP VSDSGQSVYN QIMSRLPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37294575878Probable WRKY transcription factor 4
2lex_A7e-37294575878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g089590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0964930.0AY096493.1 Arabidopsis thaliana putative transcription factor NtWRKY4 (At5g56270) mRNA, complete cds.
GenBankAY1230060.0AY123006.1 Arabidopsis thaliana putative transcription factor NtWRKY4 (At5g56270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443277.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLR0EV690.0R0EV69_9BRAS; Uncharacterized protein
STRINGXP_010443277.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]