PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g091760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 910aa    MW: 101308 Da    PI: 7.2285
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g091760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.12.2e-242476255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     r++Wt+eLH++F++a+eqL G++kA+Pk+il lm+v+gLt+e+v+ HL kYRl
  Csa11g091760.1 24 HRVVWTSELHQKFLNAIEQL-GEHKAIPKRILGLMNVEGLTRENVANHLHKYRL 76
                    79******************.9*******************************8 PP
2G2-like932.5e-29456509155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W++eLH++Fv+av+qL G +kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
  Csa11g091760.1 456 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDLMNIEGLTRENVASHLQKYRL 509
                     79*******************.********************************8 PP
3Response_reg66.21.5e-222753821109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+e+   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ + + + +  G
  Csa11g091760.1 275 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESRKALEMLRENSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMKGIIHG 366
                     799********************.***************999999******************985344..57********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+  +el +
  Csa11g091760.1 367 ACDYLVKPVGLKELQN 382
                     **********999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-232077IPR009057Homeodomain-like
PROSITE profilePS5129412.8812079IPR017930Myb domain
SuperFamilySSF466892.11E-152177IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-212477IPR006447Myb domain, plants
PfamPF002498.9E-72575IPR001005SANT/Myb domain
SuperFamilySSF521723.7E-30272390IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-33272408No hitNo description
SMARTSM004481.4E-26273384IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.834274388IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-20275382IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.49E-19297387No hitNo description
PROSITE profilePS5129411.643453512IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-30454514IPR009057Homeodomain-like
SuperFamilySSF466892.06E-20454513IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-26456509IPR006447Myb domain, plants
PfamPF002495.2E-9458508IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MGDFKSIKDP AVREESSTTR KKRHRVVWTS ELHQKFLNAI EQLGEHKAIP KRILGLMNVE  60
GLTRENVANH LHKYRLINLK IKTNAHKLNN GQLDGLINVN ATRQLPSSAP LSGSHLPINL  120
SINLEKMNLS SFIQQDHHED SSNSAIPSGT LNDQENNRVI TSLTKECEVT VNNSLECLNV  180
IRKGKIQQTK RKVEEHVTLH APHKWKPRAK PDFGGLLVQT PPGFKNKQIR LKSLCTISFG  240
EENRREESCR SIASGMELKS TADGRNDKFP VGMRVLAVDD NPTCLRKLEE LLLRCKYHVT  300
KTMESRKALE MLRENSNMFD LVISDVEMPD TDGFKLLEIG LEMDLPVIML SAHSDYDSVM  360
KGIIHGACDY LVKPVGLKEL QNIWHHVVKK NIKSYAKTIG PSRQLLAPSE SDLVPSVSKK  420
RKEKVNDSGD EDDSDRDEDD GEGSEQDGDE SGARKKPRVV WSQELHQKFV NAVQQLGLDK  480
AVPKKILDLM NIEGLTRENV ASHLQKYRLY LKKIDEGQQQ NMTPDAFGTR DSSYFHMAQL  540
DGFRDFTGTR HLSSSGLLSR SHLTKLQPHM YPSVNLQGMN SSSFIQQGHH QSSSNSANPF  600
GTYHSTLAPR IQNVNLFQRT SSPLEPLQFP RSKCSAYMGD FKSIGDRAIG GSFLDSCMPF  660
GSSSTSLPSA SSNTLMLQAN YTQPLHTATS GNQSCIEGTM SDSASQNISV QGLSRFPSQS  720
WQGNLNTTRF LSNSLPINHA FLPDQVACAG NNLGDCTSLV STENPGGEMQ CEPQLLGGFM  780
QNMNPIDGQK WEQQNCSMLN STFGNVEYPL PGDNMVFRGN NATRNKGLDV SLMSPIDNSA  840
NANGQEYVGK PITMVDPEMK LRKTENAHVD NQNQHDVFDD IMNEMMKQEE NNGMVSVATR  900
FGFDSFPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-2319514163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g091760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240290.0AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443522.10.0PREDICTED: two-component response regulator ARR18-like
RefseqXP_010443523.10.0PREDICTED: two-component response regulator ARR18-like
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLR0EV990.0R0EV99_9BRAS; Two-component response regulator
STRINGXP_010443522.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18