PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g091940.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 222aa MW: 25526.5 Da PI: 5.7222

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g091940.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.6	5.3e-19	79	168	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v + +l lp +f+ ++ ++ e+++++lede+g+++e +i +k++ l++GWk+F+ +++L++gD ++F+l++ ++f ++ Csa11g091940.1 79 FVKSMVRSHVYSCFWLGLPSRFCVDNFSE--ETIDVVLEDEEGEEYEAVYIGKKSG----LSGGWKKFALDHKLDDGDALLFELVEPNRF--KIY 165 89**********************866..6779***********544444....9********************9987777..888 PP EE- CS B3 96 vfr 98 vfr Csa11g091940.1 166 VFR 168 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-20	74	169	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.75E-22	74	170	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.47E-19	77	168	No hit	No description
Pfam	PF02362	1.6E-17	79	169	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.169	79	170	IPR003340	B3 DNA binding domain
SMART	SM01019	9.0E-26	79	170	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MAYEEARKLR LQENHKRFQV DVETGRTLDL RRSRRNSSWA NYIARPEHEC KFASEEEKVG 60 ALNAAEEFQS CLVSPHPCFV KSMVRSHVYS CFWLGLPSRF CVDNFSEETI DVVLEDEEGE 120 EYEAVYIGKK SGLSGGWKKF ALDHKLDDGD ALLFELVEPN RFKIYVFRGN ENAHLTSAGK 180 RGRTKQSEEE DKDVDEDSSD EEYILRTTKR SSARLLSKRK A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g091940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB019228	2e-59	AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBank	CP002688	2e-59	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453458.1	1e-132	PREDICTED: putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	1e-102	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	R0GRK8	1e-109	R0GRK8_9BRAS; Uncharacterized protein
STRING	XP_010443546.1	1e-154	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16141	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-87	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]