PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g093420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 301aa    MW: 32567.1 Da    PI: 5.0663
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g093420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.2e-29142195155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv++v++L G++ A+Pkti++lm+v+gL++e+v+SHLQkYRl
  Csa11g093420.1 142 RPRLVWTPQLHKRFVDVVDHL-GIKSAVPKTIMQLMNVEGLSRENVASHLQKYRL 195
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.449137198IPR017930Myb domain
SuperFamilySSF466895.73E-19139199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-29141200IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23143195IPR006447Myb domain, plants
PfamPF002492.6E-7145194IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGKEVRMSDY GDDDGEDDEH DKVPEWEIGL PEGDDLTPLS QSLVPSILAL AFSIIPERSR  60
TIHDVDRASR VTISSLRSSS SGNGYSAATE EVVVVVDRVG SSSHGSDPKK QRRSDGGGGE  120
AAAVDSMAEE EGDSGTEKTL KRPRLVWTPQ LHKRFVDVVD HLGIKSAVPK TIMQLMNVEG  180
LSRENVASHL QKYRLYLKRI QGLTTEDGPY SSDQLFSSTP VPPQSFQDGG GSNGATGKLG  240
VPSMIPMPVY GNHVGMMQGQ YHQYRDHGNE SNQYMMQQQN RFGTMVTSPS VGGGGDVNDK  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-33142198157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g093420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443718.10.0PREDICTED: transcription factor BOA-like
RefseqXP_010443719.10.0PREDICTED: transcription factor BOA-like
SwissprotQ9LTH41e-140PCLL_ARATH; Transcription factor BOA
TrEMBLR0GN751e-173R0GN75_9BRAS; Uncharacterized protein
STRINGXP_010443718.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-123G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]