PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g094030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 200aa MW: 22668.2 Da PI: 8.7188

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g094030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.3	2.1e-16	14	104	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv + + l +p +f++ k+ +kt+t+++ sg sWe+ + rk+sg +vl +GWk+ +k+ Lk gDf+ F++dg + f Csa11g094030.1 14 FFKVY--LPDESGDDLKIPISFTSFVP--KPFPKTVTVRSISGSSWELAF--RKCSGDvesFVLVNGWKRIAKDEYLKGGDFLEFEFDGFRHF-- 100 67777..44555667*****96665..56999************..888887778***********************9876666.. PP EEEE CS B3 93 vvkv 96 ++ + Csa11g094030.1 101 NFCI 104 5554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.9E-17	7	107	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.92E-18	7	107	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.308	12	108	IPR003340	B3 DNA binding domain
CDD	cd10017	4.59E-14	12	105	No hit	No description
SMART	SM01019	1.6E-13	14	108	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-14	14	105	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.0E-8	111	184	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-5	113	196	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MNKGNSSDDC LPKFFKVYLP DESGDDLKIP ISFTSFVPKP FPKTVTVRSI SGSSWELAFR 60 KCSGDVESFV LVNGWKRIAK DEYLKGGDFL EFEFDGFRHF NFCIYERETM CKRLIPAQVI 120 KDYGLHFPES ITIVDPLAKK FGTLEKQIKI QTNGTVFVKG FGSIIRRNNV KTTDKVICEI 180 MKTGDSNLVQ TMKIHILSE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1yel_A	5e-13	4	111	1	104	At1g16640
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g094030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB019231	2e-77	AB019231.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MGO3.
GenBank	CP002688	2e-77	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ056730	2e-77	DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010443804.1	1e-78	PREDICTED: B3 domain-containing protein At5g60130-like
Swissprot	Q9LVG1	4e-53	Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBL	D7MT68	1e-101	D7MT68_ARALL; Uncharacterized protein
STRING	scaffold_802655.1	1e-102	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4947	18	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60130.1	2e-45	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]