PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g094050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 137aa    MW: 15964.5 Da    PI: 9.2257
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g094050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.2e-1317109196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     ffkv       + + l lp +f +   ++k  +k +++++  g+ W++ +  rk+ g    +v+ +GWk+ vk+ gLk g+f+ F +dg+ +f++
  Csa11g094050.1  17 FFKVY--LPDESGDDLELPISFNSF--LPKSLPKSVMVRSIYGNIWKMAF--RKCCGDierFVMVNGWKKIVKEVGLKGGEFLEFDFDGSWCFNF 105
                     67777..445555669999999743..55679999***************..666666666***************************9999977 PP

                     EEEE CS
              B3  93 vvkv 96 
                     +v  
  Csa11g094050.1 106 CVYG 109
                     7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.73E-1712111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-1413111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.85615111IPR003340B3 DNA binding domain
CDDcd100175.79E-1015108No hitNo description
PfamPF023629.9E-1217109IPR003340B3 DNA binding domain
SMARTSM010191.9E-917111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MRTMNKGNCV DGRLPKFFKV YLPDESGDDL ELPISFNSFL PKSLPKSVMV RSIYGNIWKM  60
AFRKCCGDIE RFVMVNGWKK IVKEVGLKGG EFLEFDFDGS WCFNFCVYGR SFREDNRQYL  120
DNYMNPFFTV KKKDAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g094050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266323e-87AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.
GenBankCP0026883e-87CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095666.11e-67PREDICTED: B3 domain-containing protein At5g60142-like, partial
SwissprotQ9LST36e-61Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLD7MT701e-66D7MT70_ARALL; Uncharacterized protein
STRINGscaffold_802657.12e-67(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.12e-63B3 family protein