PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g094320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 172aa    MW: 18845.4 Da    PI: 8.4986
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g094320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1023.9e-322176458
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                    + Y+eClkNhA+slGgha+DGCgEf+p+++++ +++ +l+C ACgCHRnFHRr+++
  Csa11g094320.1 21 LLYNECLKNHAVSLGGHALDGCGEFIPKSTTTlTDPPSLRCDACGCHRNFHRRSPS 76
                    68**************************99999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-33886IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-262274IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-322374IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.6792374IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.4E-8133169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MHYYSTITTN NIDTGAGDMV LLYNECLKNH AVSLGGHALD GCGEFIPKST TTLTDPPSLR  60
CDACGCHRNF HRRSPSDVFS HCWSPPPVPC PGLSGFKASL TLEPLASTPH LLLSPSSFSG  120
PSNQEDKNKF TVAKEDRSAM MKKRKRTKLT VDQKEKMRGF AERAGWIFEN A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146KKRKRT
2141148KKRKRTKL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g094320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114833e-66AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9.
GenBankCP0026883e-66CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483696.14e-91PREDICTED: zinc-finger homeodomain protein 12-like
SwissprotQ9FKJ96e-71ZHD12_ARATH; Zinc-finger homeodomain protein 12
TrEMBLA0A178UPU68e-69A0A178UPU6_ARATH; ZHD12
STRINGXP_010483696.11e-90(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.17e-58homeobox protein 26