PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g097280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 295aa    MW: 32984.9 Da    PI: 7.771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g097280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000151232323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+ksFs+   L  H+++H
  Csa11g097280.1 12 CQVCKKSFSNGKALGGHMKSH 32
                    *******************99 PP
2zf-C2H213.70.00019258280123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C++C+++F++   L  H + H
  Csa11g097280.1 258 YECQICNRVFKSGQALGGHKKIH 280
                     99***********9999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2631037IPR007087Zinc finger, C2H2
SMARTSM003550.361032IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-101134IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PfamPF139126.9E-8217239IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993217244IPR007087Zinc finger, C2H2
SMARTSM003550.47217239IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.23E-8217280No hitNo description
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
PfamPF139122.1E-11257280IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429258280IPR007087Zinc finger, C2H2
SMARTSM003550.016258280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMNSLLTQKK NCQVCKKSFS NGKALGGHMK SHRKLSPESS TSSITSSLLS RINLGANFRT  60
HETISMRSVH TNELVGGQTP DLNNKEGEQQ ATTLKKKLVL DLDKENSTES PALCLLQMKD  120
MWSKSCQNPK STDSLISTRK GKDIEKYIEI DSEEDKEDSD DEYVVEDEDN EDGDALKFLS  180
SNVGYLTADS DENDDNYGDE NAYYGTKERK GKKQSKYMCD ICGKILRSYQ ALGGHRTSHG  240
NKKLKISDQD APAVRRHYEC QICNRVFKSG QALGGHKKIH YMFLQPINFS TSAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g097280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446230.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLR0G7H61e-124R0G7H6_9BRAS; Uncharacterized protein
STRINGXP_010446230.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.14e-78C2H2-like zinc finger protein