PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g097420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 227aa    MW: 25637.6 Da    PI: 5.9207
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g097420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.3e-08111138232
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfs 32 
                     +y+GVr+++ +g+++AeIrdp +     r++
  Csa11g097420.1 111 HYRGVRRRP-WGKFAAEIRDPAKK--GSRIW 138
                     7********.**********8443..26666 PP
2AP238.13.7e-121401811255
             AP2  12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Csa11g097420.1 140 WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDYAAFKLRG 181
                     9*********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-11110138IPR001471AP2/ERF domain
SMARTSM003802.6E-31111195IPR001471AP2/ERF domain
CDDcd000181.24E-15111189No hitNo description
SuperFamilySSF541712.09E-6111138IPR016177DNA-binding domain
PfamPF008474.5E-9111181IPR001471AP2/ERF domain
PROSITE profilePS5103223.815111189IPR001471AP2/ERF domain
PRINTSPR003674.2E-13112123IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-19133190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-23139190IPR001471AP2/ERF domain
PRINTSPR003674.2E-13171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MATLEESSDM DVILQKHLFD DLMIPDDFIE DFVFDDTVFV SGLWSLEPFN QPVPKLEPSS  60
PVLDPDSYVQ EFLQVEAESS SSSSSSSITS PEVETVSNWE KTKRFEETTR HYRGVRRRPW  120
GKFAAEIRDP AKKGSRIWPW GKFAAEIRDP AKKGSRIWLG TFESDIDAAR AYDYAAFKLR  180
GRKAVLNFPL DAGKYDAPVN SCRKRRRSDV PQPRGTRTST SSSSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23110190464ATERF1
3gcc_A2e-23110190464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206RKRRR
2202207RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g097420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122391e-144AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBankAY0459681e-144AY045968.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBankAY0793211e-144AY079321.1 Arabidopsis thaliana putative ethylene responsive element binding factor (At5g61590) mRNA, complete cds.
GenBankCP0026881e-144CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443982.11e-123PREDICTED: ethylene-responsive transcription factor ERF107-like
SwissprotQ9FKG21e-101EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBLA0A078GEM01e-104A0A078GEM0_BRANA; BnaC07g31340D protein
TrEMBLA0A0D3DDN41e-104A0A0D3DDN4_BRAOL; Uncharacterized protein
TrEMBLM4D8X91e-104M4D8X9_BRARP; Uncharacterized protein
STRINGXP_010443982.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.11e-101ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Suh MC,Go YS
    DEWAX-mediated transcriptional repression of cuticular wax biosynthesis in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(8): p. e29463
    [PMID:25763625]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  5. Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W
    Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins.
    PLoS ONE, 2016. 11(4): p. e0153216
    [PMID:27073862]
  6. Ju S,Go YS,Choi HJ,Park JM,Suh MC
    DEWAX Transcription Factor Is Involved in Resistance to Botrytis cinerea in Arabidopsis thaliana and Camelina sativa.
    Front Plant Sci, 2017. 8: p. 1210
    [PMID:28744297]
  7. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]