PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g097430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 232aa    MW: 25750.7 Da    PI: 4.679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g097430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.52.2e-10981252855
             AP2  28 rkrfslgkfgtaeeAakaaiaarkkleg 55 
                       r++lg+++ta eAa+a+++a+ kl+g
  Csa11g097430.1  98 GSRIWLGTYDTAVEAARAYDQAAFKLRG 125
                     39************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.89558133IPR001471AP2/ERF domain
SMARTSM003801.4E-1292139IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1392135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-1792133IPR001471AP2/ERF domain
PfamPF008471.5E-695125IPR001471AP2/ERF domain
CDDcd000182.26E-1897133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MATKQESLAI EFISQHLLTD FAPIETKVTN FAFHETEPSL FTNQAHSFHS ETTDQLPKPN  60
STLNRRKPPL PNLSVPRTVS TTTEKTEEEE ERRPYRGGSR IWLGTYDTAV EAARAYDQAA  120
FKLRGRKAIL NFPLDVRATS ETCFEEGVVG LGKRKRVNSS PPPEEEKAAR VKVEEEEESI  180
TSETTMEDEV ETVPLTPSSW MGFWDMGAGD GIFSVPPLSP TSPNFSVISV T*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g097430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0886941e-126AY088694.1 Arabidopsis thaliana clone 92102 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483842.11e-126PREDICTED: ethylene-responsive transcription factor ERF104-like
SwissprotQ9FKG11e-103EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLR0F0T31e-124R0F0T3_9BRAS; Uncharacterized protein
STRINGXP_010483842.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.14e-95ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]