PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g101340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CAMTA
Protein Properties Length: 1038aa    MW: 115567 Da    PI: 6.1907
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g101340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1188.37.6e-59191362118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fq
  Csa11g101340.1  19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQ 113
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rrcyw+Le++l +iv+vhylevk
  Csa11g101340.1 114 RRCYWMLEQDLMHIVFVHYLEVK 136
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.27515141IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038598.2E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.06E-13446530IPR014756Immunoglobulin E-set
SuperFamilySSF484037.15E-19625738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.412627738IPR020683Ankyrin repeat-containing domain
PfamPF127961.8E-7628704IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.4E-18628739IPR020683Ankyrin repeat-containing domain
CDDcd002041.86E-14639729No hitNo description
SMARTSM002481600644673IPR002110Ankyrin repeat
PROSITE profilePS500888.843644676IPR002110Ankyrin repeat
SMARTSM002480.0029677706IPR002110Ankyrin repeat
PROSITE profilePS5008810.873677709IPR002110Ankyrin repeat
SMARTSM000150.32852874IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.23E-8853902IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.002854873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.858854882IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304876900IPR000048IQ motif, EF-hand binding site
PfamPF006124.6E-4878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS  180
GDSRQASSSL QPNPEPQTVV PQIIHHQNAI TMNSCNTASV LGNPDGWTSA PGIGLVSQVH  240
GNRVKESDSQ RSGDVPAWDA SFENSLARYQ NLPYNAPLTQ TQPLQNQVNW QIPVQESVPL  300
QKWPMDSHSG MTDTTDLALF GQRGHENFGT FSSLLGSQNQ QPSSFQAPFT NNEAAYIPKL  360
GPEDLIYEAS ANQTLPLRKA LLKKEDSLKK VDSFSRWVSK ELGEMEDLQM QSSSGGIAWT  420
SVECETAAAG SSLSPSLSED QRFTMIDFWP KWTQTDSEVE VMVIGTFLLS PQEVTSYSWS  480
CMFGEVEVPA EILVDGVLCC HAPPHEVGRV PFYITCSDRF SCSEVREFDF LPGSTRKLNA  540
TDIYGANTIE ASLHLRFDSL LALRSSVEEH HIFENVGEKR RKISKIMLLK DEKESLLPGT  600
VEKDLSALEA KERLIREEFE DKLYLWLIHK VTEEGKGPNI LDEDGQGVLH LAAALGYDWG  660
IKPILAAGVS INFRDANGWS ALHWAAFSGR EDTVAVLVSL GADAGALADP SPEHPLGKTA  720
ADLAYGNGHR GISGFLAESS LTSYLEKLTV DAKENSSADS SGAKAVLTVA ERTATPMSYG  780
DVPETLSMKD SLTAVLNATQ AADRLHQVFR MQSFQRKQLS ELGGDNEFDI SDELAVSFAA  840
AKTKKPGHSN GAVHAAAVQI QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH QVRKQYRAII  900
WSVGLLEKII LRWRRKGSGL RGFKRDTITK PAEPVCPAPQ EDDYDFLKEG RKQTEERLQK  960
ALTRVKSMAQ YPEARAQYRR LLTVVEGFRE NEASSSSSAL KNNNSNTEEA ANYNEEDDLI  1020
DIDSLLDDDS FMSLAFE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g101340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444352.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
RefseqXP_010444355.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X3
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLD7MR880.0D7MR88_ARALL; Calmodulin-binding protein
STRINGXP_010444355.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]