PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g102290.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

EIL

Protein Properties

Length: 353aa MW: 40042.6 Da PI: 4.1584

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g102290.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	94.1	3.1e-29	38	129	1	81
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn..............ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 ++lkkrmwkd++l+++lk++k+++ ++ + + +s+ ++ e++rrkkm+r+QD++LkYM+k+mevc+aqGfvYgi+pek Csa11g102290.1 38 DDLKKRMWKDRNLMCKLKQQKRDNHNSVIS---SPSSSstsasspvsssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKAQGFVYGIVPEKV 129 79******************98744333...3333334567899999******************************************95 PP
2	EIN3	31.6	3.1e-10	161	237	286	353
XXXXXX.XXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 286 gkkeskikhvqavktta............gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 +++e+ ++ ++++k+++ ++++ +krk +++ ++++ s+ ++tcq+s++++s+++l+f dkn ++ +e Csa11g102290.1 161 QDQEPAVS-MRKDKRADqewspnacflvdQESFGNKRKGEFVGQEAMLSN--VYTCQNSSCPSSDVSLGFVDKNLRTGHE 237 33333322.333333335666666777779****************99..7**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	2.0E-27	38	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MVEVQDLEPL SPIQDEDDDD FEEDEGEFDR FGEDISYDDL KKRMWKDRNL MCKLKQQKRD 60 NHNSVISSPS SSSTSASSPV SSSAIVRRAE ASRRKKMARS QDSVLKYMMK IMEVCKAQGF 120 VYGIVPEKVS DNEDKDGDQE PSGFTCFDKE SSLNPCFLVA QDQEPAVSMR KDKRADQEWS 180 PNACFLVDQE SFGNKRKGEF VGQEAMLSNV YTCQNSSCPS SDVSLGFVDK NLRTGHEIEC 240 LYGNQEPMNH SSGGSDGYVR SMTTSDDDYS ASSRAEDTRD YHNQDGNWLD YLWFERLHDL 300 NCSDQGFEDQ TNTEVDLNQL PDHSDSNQTM NEEAFSLWDM GCEDKDVYMS QD*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MVEVQDLEPL SPIQDEDDDD FEEDEGEFDR FGEDISYDDL KKRMWKDRNL MCKLKQQKRD  60
NHNSVISSPS SSSTSASSPV SSSAIVRRAE ASRRKKMARS QDSVLKYMMK IMEVCKAQGF  120
VYGIVPEKVS DNEDKDGDQE PSGFTCFDKE SSLNPCFLVA QDQEPAVSMR KDKRADQEWS  180
PNACFLVDQE SFGNKRKGEF VGQEAMLSNV YTCQNSSCPS SDVSLGFVDK NLRTGHEIEC  240
LYGNQEPMNH SSGGSDGYVR SMTTSDDDYS ASSRAEDTRD YHNQDGNWLD YLWFERLHDL  300
NCSDQGFEDQ TNTEVDLNQL PDHSDSNQTM NEEAFSLWDM GCEDKDVYMS QD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g102290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013395	0.0	AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010444484.1	1e-164	PREDICTED: ETHYLENE INSENSITIVE 3-like 5 protein
Swissprot	Q9FJQ5	1e-122	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBL	A0A078F5Z6	1e-141	A0A078F5Z6_BRANA; BnaA06g24030D protein
STRING	XP_010444484.1	1e-164	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16143	4	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65100.1	1e-124	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]