PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g102540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 514aa    MW: 57217.1 Da    PI: 6.3936
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g102540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-10226283156
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkklege 56 
                     s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g+
  Csa11g102540.1 226 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWGH 283
                     57*******************4444.2344336655.7799999*************997 PP
2AP249.11.4e-15354403355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Csa11g102540.1 354 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 403
                     9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-8226283IPR001471AP2/ERF domain
CDDcd000185.24E-18226292No hitNo description
SuperFamilySSF541713.86E-14226291IPR016177DNA-binding domain
SMARTSM003806.4E-20227296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-11227291IPR001471AP2/ERF domain
PROSITE profilePS5103216.95227290IPR001471AP2/ERF domain
PRINTSPR003677.6E-5228239IPR001471AP2/ERF domain
PRINTSPR003677.6E-5272292IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17352412IPR016177DNA-binding domain
CDDcd000184.88E-11352411No hitNo description
PROSITE profilePS5103219.269353411IPR001471AP2/ERF domain
SMARTSM003803.3E-30353417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18353411IPR001471AP2/ERF domain
PfamPF008476.9E-10354403IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MAPPPMTNLL TFSLSPMEML KSPDQSHFPP PPSYDASSTP YLIDNFYVFK EEAAASSMAD  60
STTLSTFFDS QILSQTQIPK LEDFLGDSFV RYSDDQTETQ DDSSLIRLYD LRDHTVTGGV  120
TGFFSDHHHH HDFKTVNSSG SQILDDSASD IVATHLSGHA VKSSSTTAEL GFNGGASTGE  180
ALSLAVNNNT SDQPPQSNKK TTASTKKETS DDSKKKVVEP LEQRTSIYRG VTRHRWTGRY  240
EAHLWDNSCR REGQARKGRQ GGYDKEDKAA RAYDLAALKY WGHIATTNFP VASYSKEVEE  300
MNHMTKQEFX IATTNFPVAS YSKELEEMNH MTKQEFIASL RRKSSGFSRG ASMYRGVTRH  360
HQQGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGINAVTNF EMNRYDVEAV  420
MKCSFPVGGA AKRHKVAVES PPSSDHSLQQ QDLLPSSSSS DVNPNSIPCG IPFEPSLLYH  480
HQNFFQHYPL VSDSTVQVPM NPAEFFLWPN QSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g102540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608870.0AY560887.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088688.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLR0EWM60.0R0EWM6_9BRAS; Uncharacterized protein
STRINGXP_010444513.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]