PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g103270.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 152aa MW: 16671.1 Da PI: 10.9353

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g103270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.7e-14	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v+++G+g W+tI + k R+ ++k++w++ Csa11g103270.1 5 KQKWTPEEEAALKAGVRKHGTGKWRTILSDPEfslvlKSRSNVDLKDKWRN 55 79***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.448	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.46E-17	2	61	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-15	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	4.9E-10	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.15E-19	6	56	No hit	No description
SuperFamily	SSF46785	5.01E-5	118	152	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.7E-4	119	152	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MGAPKQKWTP EEEAALKAGV RKHGTGKWRT ILSDPEFSLV LKSRSNVDLK DKWRNISVTA 60 LWGSRKKAKL ALKRTLPATK PDDNNTAVSI VALANDDERA KPTSPGRSGG GSPRASASKR 120 SITSLDKIIL EAITNLKELR GSDRTSIFMY IE

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g103270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATU83837	0.0	U83837.1 Arabidopsis thaliana telomere repeat binding factor 2 (TRB2), complete cds.
GenBank	AY039883	0.0	AY039883.1 Arabidopsis thaliana AT5g67580/K9I9_15 mRNA, complete cds.
GenBank	AY077668	0.0	AY077668.1 Arabidopsis thaliana AT5g67580/K9I9_15 mRNA, complete cds.
GenBank	AY519545	0.0	AY519545.1 Arabidopsis thaliana MYB transcription factor (At5g67580) mRNA, complete cds.
GenBank	HQ322386	0.0	HQ322386.1 Arabidopsis thaliana truncated telomeric DNA binding protein isoform (At5g67580) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010444623.1	1e-105	PREDICTED: telomere repeat-binding factor 2-like
Swissprot	Q9FJW5	3e-83	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	R0GN57	1e-97	R0GN57_9BRAS; Uncharacterized protein
STRING	XP_010444623.1	1e-104	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3809	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	7e-71	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]