PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g103440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 434aa    MW: 48612.3 Da    PI: 4.8542
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g103440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.61.1e-96314222373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPil 91 
                     ++lLl+cA+a++s+d++laq++++ l++laspdgd++qRla+ f++AL +r a++ +  +  +++ +t+ +    + +++++ +l  f++++P++
  Csa11g103440.1  31 EQLLLHCANAIESNDATLAQHIIWVLNNLASPDGDSTQRLASSFLRALMSRAASKIPAFA-FFSVAATAASVsrkTLHRFSVIELaeFVDLTPWH 124
                     79****************************************************777655.44444444444112444555555599******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefn 179
                     +f++++aN aIl+aveg + vHi+D+++++++Q p+L+++La++   ++pp l++T+++s +++      + ++ee+g++L +fA++ ++ +ef+
  Csa11g103440.1 125 RFGFIAANAAILDAVEGYSSVHIVDLSLTNCMQMPTLIDSLANKLhkQPPPLLKLTVIASDDEShppplLEISYEELGSKLVNFATTRNIAMEFR 219
                     ******************************************988778899********98877899888999********************** PP

            GRAS 180 vl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     ++   +++ l++l +e+Lr +p   +Eal+Vn++++lh+++de+++++ +r+ +Lk +++l+P++v++++++ad +s+++  r+ +  +y++  +
  Csa11g103440.1 220 IIsssYSDGLSSL-IEQLRNDPfvfNEALVVNCHMMLHYIPDETLTSNPTRSVFLKELRDLNPTIVTLIDEDADFTSTNLISRLRSLYNYMWIPY 313
                     *966555566666.9******************************************************************************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgsl 358
                     d+ ++ l r se+r+++E+  ++++i nv+a+egaer+er e +++W er++ea F  v ++e++a++ak++l++++ ++g++ +    ++ + +
  Csa11g103440.1 314 DTADMYLTRGSEQRQWYEAD-VSWKIDNVIAKEGAERVERLEPKSRWFERMREAKFAGVGFGEEVATEAKTMLEEHAtGWGMKRDvdedDDVERF 407
                     ********************.9*******************************************************999987664433336789 PP

            GRAS 359 vlgWkdrpLvsvSaW 373
                     vl+Wk++++v++S+W
  Csa11g103440.1 408 VLTWKGHSVVFASSW 422
                     9************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.9924398IPR005202Transcription factor GRAS
PfamPF035143.8E-9431422IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MNTTRILNPP RPLWPGFSSS KSLCGDANCM EQLLLHCANA IESNDATLAQ HIIWVLNNLA  60
SPDGDSTQRL ASSFLRALMS RAASKIPAFA FFSVAATAAS VSRKTLHRFS VIELAEFVDL  120
TPWHRFGFIA ANAAILDAVE GYSSVHIVDL SLTNCMQMPT LIDSLANKLH KQPPPLLKLT  180
VIASDDESHP PPLLEISYEE LGSKLVNFAT TRNIAMEFRI ISSSYSDGLS SLIEQLRNDP  240
FVFNEALVVN CHMMLHYIPD ETLTSNPTRS VFLKELRDLN PTIVTLIDED ADFTSTNLIS  300
RLRSLYNYMW IPYDTADMYL TRGSEQRQWY EADVSWKIDN VIAKEGAERV ERLEPKSRWF  360
ERMREAKFAG VGFGEEVATE AKTMLEEHAT GWGMKRDVDE DDDVERFVLT WKGHSVVFAS  420
SWAPINGVVA DLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-501542472474Protein SHORT-ROOT
5b3h_B2e-502642429420Protein SHORT-ROOT
5b3h_E2e-502642429420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g103440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444650.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLD7MUQ80.0D7MUQ8_ARALL; Uncharacterized protein
STRINGXP_010444650.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-180GRAS family protein