PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12301s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 119aa    MW: 13069.3 Da    PI: 3.9755
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12301s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS36.47.4e-1264116255
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                      +++++cA+ +s++d ++a++ L +++e +s+ gdp++R+ +yf+eAL++rl+ 
  Csa12301s010.1  64 LKAIYNCAR-ISDSDPNEASKSLVQIRESVSELGDPTERVGFYFAEALSNRLSP 116
                     578999**9.8999*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.45737119IPR005202Transcription factor GRAS
PfamPF035142.6E-964116IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
YPSRLSSDLN NRVIDTSSPL PPPTLWPPSS PLSIPPHETT TTTTTATEDL ETNDSDFDLE  60
PPLLKAIYNC ARISDSDPNE ASKSLVQIRE SVSELGDPTE RVGFYFAEAL SNRLSPDYS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12301s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087701.12e-75PREDICTED: scarecrow-like protein 4, partial
RefseqXP_019088575.13e-75PREDICTED: scarecrow-like protein 4
SwissprotQ9FL035e-32SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A178US258e-30A0A178US25_ARATH; Uncharacterized protein
STRINGXP_010444732.15e-75(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-33GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]