PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g001170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 188aa    MW: 20926.1 Da    PI: 4.6269
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g001170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK21.73.9e-07112136226
          RWP-RK   2 ekeisledlskyFslpikdAAkeLg 26 
                     e++i+le+l+++F++++kdAAk++g
  Csa12g001170.1 112 ENDITLETLKQHFAGSLKDAAKNIG 136
                     789********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MLDLHAALAV PLLTRHNRTV QFVLEFFFPR DCLDIQTQRL TLVSQLNQRF QSSPHLMVDD  60
QLAKDVRDTA TPLTDHSSRS AQEEATDHKG KSLSFSSSSS SLESRKRKTR AENDITLETL  120
KQHFAGSLKD AAKNIGDDDD DDCITYCSMS DDLEEDLQTA RNLKVAIEED QESWTFSSKT  180
AGGDGLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108SRKRKT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g001170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0695584e-69AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence.
GenBankAL0355384e-69AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBankAL0355394e-69AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project).
GenBankAL1615934e-69AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBankCP0026874e-69CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436926.13e-74PREDICTED: protein NLP3-like
SwissprotQ9SVF14e-50NLP3_ARATH; Protein NLP3
TrEMBLR0F7T33e-55R0F7T3_9BRAS; Uncharacterized protein
STRINGXP_010436926.11e-73(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.11e-49Nin-like family protein
Publications ? help Back to Top
  1. Doidy J, et al.
    "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
    BMC Genomics, 2016. 17: p. 92
    [PMID:26843062]