PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g003630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 557aa    MW: 61647.9 Da    PI: 7.5099
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g003630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.4e-16285344155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d   +  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Csa12g003630.1 285 SQYRGVTRHRWTGRYEAHLWDnSFKkEGhsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 344
                     78*******************644456687446*************************98 PP
2AP2513.6e-16387438155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Csa12g003630.1 387 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDVAAIKFRG 438
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-13285344IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-16285354IPR016177DNA-binding domain
CDDcd000183.32E-21285351No hitNo description
Gene3DG3DSA:3.30.730.101.8E-15286352IPR001471AP2/ERF domain
PROSITE profilePS5103218.755286352IPR001471AP2/ERF domain
SMARTSM003803.4E-27286358IPR001471AP2/ERF domain
PRINTSPR003671.2E-6287298IPR001471AP2/ERF domain
PfamPF008471.7E-11387438IPR001471AP2/ERF domain
CDDcd000181.05E-25387448No hitNo description
SuperFamilySSF541716.54E-18387447IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-18388446IPR001471AP2/ERF domain
PROSITE profilePS5103218.966388446IPR001471AP2/ERF domain
SMARTSM003803.8E-34388452IPR001471AP2/ERF domain
PRINTSPR003671.2E-6428448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MKSFCDNDEN NHSNTTNLLG FSLSSNMMKM GGRGGGEAIY SSTTSSAATS SSSVPPQLVV  60
GDNSNNYGVC YGSNSTGEIY SHMSVMPLRS DGSLCLMEAL NRSSHSNHHQ DSSPKMEDFF  120
GTHHHNNTSH KEAMDLSLDS LFYNTTHEPN TATNFQEFFS FPQTRNHHEG ETRNYENDPG  180
LTHGGSFNVG VYGEFQQSLS LSMSPGSQSS CITGSHHHHQ TQQNHQSQNQ NHHQISEALV  240
DTSVGFETTT MVAAKKKRGQ EEVVVVGQKP IVHRKSIDTF GQRTSQYRGV TRHRWTGRYE  300
AHLWDNSFKK EGHSRKGRQV YLGGYDMEEK AARAYDLAAL KYWGPSTHTN FSVENYQKEI  360
DDMKNMTRQE YVAHLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFG  420
TQEEAAEAYD VAAIKFRGTN AVTNFDITRY DVERIMSSNT LLSGELARRN NNSVVVCNND  480
DQTALTAVLD GGSKASSPER VLSFPAIFAL PQVGPKMFGA NVVGNMSPWS SNPNAELKTV  540
ALTLPQMPVF AAWADS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g003630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU402560.0U40256.1 Arabidopsis thaliana ovule development protein (AINTEGUMENTA) mRNA, complete cds.
GenBankATU413390.0U41339.1 Arabidopsis thaliana ANT (AINTEGUMENTA) mRNA, complete cds.
GenBankAY0807060.0AY080706.1 Arabidopsis thaliana putative ovule development protein aintegumenta (At4g37750) mRNA, complete cds.
GenBankAY1172070.0AY117207.1 Arabidopsis thaliana putative ovule development protein aintegumenta (At4g37750) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446628.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389140.0ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLR0GHP40.0R0GHP4_9BRAS; Uncharacterized protein
STRINGXP_010446628.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.10.0AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]