PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g003650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 245aa    MW: 28126.4 Da    PI: 7.1832
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g003650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-11141192556
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                     ++ +r+++NRe+A+rsR RK+  i++L++ v  L+ eN++L ++l     + 
  Csa12g003650.1 141 RKRKRMESNRESAKRSRMRKQSHIDNLRNQVNRLDLENRELGNRLRLVLHQL 192
                     6789*************************************98877655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.2E-10134194No hitNo description
SMARTSM003381.1E-13137201IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.841139202IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.8E-10141192No hitNo description
PfamPF001703.4E-9141186IPR004827Basic-leucine zipper domain
CDDcd147024.30E-18142193No hitNo description
PROSITE patternPS000360144159IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLSTVPAFSF SEPGLVNQFS GFQTGFTPWE WDCSDLFFSV DQMSLEPAVP SPCYGESDTG  60
SVRINSGSHY MKTGSDESCL GFVKTSPGFD DANQSDGLPC SQAHEPDSED PKKLTAITNS  120
GSGEQNHNGK FLTQPEMTEE RKRKRMESNR ESAKRSRMRK QSHIDNLRNQ VNRLDLENRE  180
LGNRLRLVLH QLQRVNTDNN RLVTEQEILR LRLSEMRRVL IIRQLQQQQQ WELHNRRMIM  240
TEHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g003650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937250.0AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730.
GenBankAL0357090.0AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project).
GenBankAL1615920.0AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446630.20.0PREDICTED: light-inducible protein CPRF3
TrEMBLA0A178UR911e-141A0A178UR91_ARATH; BZIP7
TrEMBLQ9T0621e-141Q9T062_ARATH; BZIP transcription factor-like protein
STRINGXP_010446630.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-112basic leucine-zipper 7