PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g003920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21561.3 Da    PI: 9.9571
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g003920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.3e-22957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie+  +r+++f+kR+ng+lKKA+ELS LCd+ v +i fs++gkl+ +
  Csa12g003920.1  9 KKIEDRQQRNISFAKRKNGLLKKAYELSLLCDVAVGLIFFSPSGKLFIF 57
                    68********************************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.455161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-24278IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRVKIQMKK IEDRQQRNIS FAKRKNGLLK KAYELSLLCD VAVGLIFFSP SGKLFIFDAK  60
LSIEDIIEKY NSQPTYKNAR LKDATVKIKL DDFQIVYFCF LMAIEELIAK MRKESMRSGP  120
NLRKIHDDGK IDECRIKLAE VERELGRYLK SPNQWESLAE LIDRVELLET TLAKVQSRKK  180
ELESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16174175MEF2 CHIMERA
6byy_B2e-16174175MEF2 CHIMERA
6byy_C2e-16174175MEF2 CHIMERA
6byy_D2e-16174175MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g003920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446661.11e-111PREDICTED: agamous-like MADS-box protein AGL104
STRINGXP_010446661.11e-111(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17254910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-24AGAMOUS-like 104