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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa12g004760.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | GRAS | ||||||||
| Protein Properties | Length: 577aa MW: 63945.5 Da PI: 5.0284 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 125.2 | 7.5e-39 | 125 | 266 | 2 | 145 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
+e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eALa+ l++ + p + +s+++ ++++ a k +s +sPi+ fsh
Csa12g004760.1 125 IEDLIRVVDCVESDELQLAQVILSRLNQRlRSPSGRPLQRAAFYFKEALASLLTG-----TNRNPIRLSSWSEIVQRIRAIKEYSGISPIPLFSH 214
678*************************99*************************.....778899999999*********************** PP
GRAS 96 ltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiT 145
+taNqaIl++++++ vH++Df+i+ G+Q+++L++++a+++e +sl +T
Csa12g004760.1 215 FTANQAILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSEALASL-LT 266
***********99977789************************9988776.45 PP
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| 2 | GRAS | 281.8 | 1.9e-86 | 259 | 575 | 47 | 374 |
GRAS 47 eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpeg 138
eALa+ l++ + p + +s+++ ++++ a k +s +sPi+ fsh+taNqaIl++++++ vH++Df+i+ G+Q+++L++++a+++ +
Csa12g004760.1 259 EALASLLTG-----TNRNPIRLSSWSEIVQRIRAIKEYSGISPIPLFSHFTANQAILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSVS 348
899999999.....7788999999999*********************************99977789*************************** PP
GRAS 139 ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
lR+T+v+++e + e++ ++e+L++fA+e++++f++++++ k++e+l+++++r+ +gE ++V ++ +++r l s ++++++ +++
Csa12g004760.1 349 GGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLLKTFEMLSFKAIRFVEGERTIVLISPAIFRRL-------SGISDFVNNLRR 434
***********66..9***********************************************************9.......33557******* PP
GRAS 234 lsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
+sPkvvv+v++e ++ +s+sF ++f++ale+y+++++sl+a +p+ + ++ vE+++l+++i+ +v ++ ++ r++ ++Wre++ +aG++
Csa12g004760.1 435 VSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAFVLRPKISAAVETAADR---RNTGEMTWREAFCAAGMR 526
************76677899*************************************************99998...89999************* PP
GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
p++ls++a qa++ll+k +++g++v +++g+lvl+W++r+Lv++SaWr
Csa12g004760.1 527 PIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 575
************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 38.441 | 98 | 555 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 6.7E-84 | 259 | 575 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 577 aa Download sequence Send to blast |
MKIPASSPQD TTNNNNSTDS NHLSMDEHVM RSMDWDSIMK ELELDDDSAP NSLKTGFTTT 60 TATTDSTILP LYAVDSNLPG FPDQIQPSDF ESSTDIVYPG QNQQQPTGYG FNSLDGVDNG 120 GFDFIEDLIR VVDCVESDEL QLAQVILSRL NQRLRSPSGR PLQRAAFYFK EALASLLTGT 180 NRNPIRLSSW SEIVQRIRAI KEYSGISPIP LFSHFTANQA ILDSLSSQSS SPFVHVVDFE 240 IGFGGQYASL MREIAEKSEA LASLLTGTNR NPIRLSSWSE IVQRIRAIKE YSGISPIPLF 300 SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EIAEKSVSGG FLRVTAVVAE 360 ECAVETRLVK ENLTQFAAEM KIRFQIEFVL LKTFEMLSFK AIRFVEGERT IVLISPAIFR 420 RLSGISDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP 480 PGDLVKKIVE AFVLRPKISA AVETAADRRN TGEMTWREAF CAAGMRPIQL SQFADFQAEC 540 LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 8e-21 | 130 | 574 | 25 | 378 | Protein SCARECROW |
| 5b3h_A | 8e-21 | 130 | 574 | 24 | 377 | Protein SCARECROW |
| 5b3h_D | 8e-21 | 130 | 574 | 24 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa12g004760.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK118497 | 0.0 | AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11. | |||
| GenBank | BT011807 | 0.0 | BT011807.1 Arabidopsis thaliana At4g36710 mRNA sequence. | |||
| GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010432142.1 | 0.0 | PREDICTED: scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 0.0 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | R0F561 | 0.0 | R0F561_9BRAS; Uncharacterized protein | ||||
| STRING | XP_010432142.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4291 | 28 | 57 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 0.0 | GRAS family protein | ||||
| Publications ? help Back to Top | |||
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