PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g004760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 577aa    MW: 63945.5 Da    PI: 5.0284
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g004760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS125.27.5e-391252662145
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eALa+ l++      +  p + +s+++ ++++ a k +s +sPi+ fsh
  Csa12g004760.1 125 IEDLIRVVDCVESDELQLAQVILSRLNQRlRSPSGRPLQRAAFYFKEALASLLTG-----TNRNPIRLSSWSEIVQRIRAIKEYSGISPIPLFSH 214
                     678*************************99*************************.....778899999999*********************** PP

            GRAS  96 ltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiT 145
                     +taNqaIl++++++     vH++Df+i+ G+Q+++L++++a+++e  +sl +T
  Csa12g004760.1 215 FTANQAILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSEALASL-LT 266
                     ***********99977789************************9988776.45 PP

2GRAS281.81.9e-8625957547374
            GRAS  47 eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpeg 138
                     eALa+ l++      +  p + +s+++ ++++ a k +s +sPi+ fsh+taNqaIl++++++     vH++Df+i+ G+Q+++L++++a+++ +
  Csa12g004760.1 259 EALASLLTG-----TNRNPIRLSSWSEIVQRIRAIKEYSGISPIPLFSHFTANQAILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSVS 348
                     899999999.....7788999999999*********************************99977789*************************** PP

            GRAS 139 ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
                        lR+T+v+++e   + e++ ++e+L++fA+e++++f++++++ k++e+l+++++r+ +gE ++V ++ +++r l       s ++++++ +++
  Csa12g004760.1 349 GGFLRVTAVVAEE--CAVETRLVKENLTQFAAEMKIRFQIEFVLLKTFEMLSFKAIRFVEGERTIVLISPAIFRRL-------SGISDFVNNLRR 434
                     ***********66..9***********************************************************9.......33557******* PP

            GRAS 234 lsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     +sPkvvv+v++e  ++  +s+sF ++f++ale+y+++++sl+a +p+ +  ++ vE+++l+++i+ +v ++ ++   r++  ++Wre++ +aG++
  Csa12g004760.1 435 VSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAFVLRPKISAAVETAADR---RNTGEMTWREAFCAAGMR 526
                     ************76677899*************************************************99998...89999************* PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     p++ls++a  qa++ll+k +++g++v +++g+lvl+W++r+Lv++SaWr
  Csa12g004760.1 527 PIQLSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 575
                     ************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.44198555IPR005202Transcription factor GRAS
PfamPF035146.7E-84259575IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MKIPASSPQD TTNNNNSTDS NHLSMDEHVM RSMDWDSIMK ELELDDDSAP NSLKTGFTTT  60
TATTDSTILP LYAVDSNLPG FPDQIQPSDF ESSTDIVYPG QNQQQPTGYG FNSLDGVDNG  120
GFDFIEDLIR VVDCVESDEL QLAQVILSRL NQRLRSPSGR PLQRAAFYFK EALASLLTGT  180
NRNPIRLSSW SEIVQRIRAI KEYSGISPIP LFSHFTANQA ILDSLSSQSS SPFVHVVDFE  240
IGFGGQYASL MREIAEKSEA LASLLTGTNR NPIRLSSWSE IVQRIRAIKE YSGISPIPLF  300
SHFTANQAIL DSLSSQSSSP FVHVVDFEIG FGGQYASLMR EIAEKSVSGG FLRVTAVVAE  360
ECAVETRLVK ENLTQFAAEM KIRFQIEFVL LKTFEMLSFK AIRFVEGERT IVLISPAIFR  420
RLSGISDFVN NLRRVSPKVV VFVDSEGWTE IAGSGSFRRE FVSALEFYTM VLESLDAAAP  480
PGDLVKKIVE AFVLRPKISA AVETAADRRN TGEMTWREAF CAAGMRPIQL SQFADFQAEC  540
LLEKAQVRGF HVAKRQGELV LCWHGRALVA TSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2113057425378Protein SCARECROW
5b3h_A8e-2113057424377Protein SCARECROW
5b3h_D8e-2113057424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g004760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184970.0AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11.
GenBankBT0118070.0BT011807.1 Arabidopsis thaliana At4g36710 mRNA sequence.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432142.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0F5610.0R0F561_9BRAS; Uncharacterized protein
STRINGXP_010432142.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]