PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g004870.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 214aa MW: 24406 Da PI: 9.8116

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g004870.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.3	3e-21	18	62	5	49
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + n qvtfskR+ g++KKA+EL++LC+a++++i+fs+ gk++ + Csa12g004870.1 18 KEKNLQVTFSKRKFGLFKKASELCTLCGAQILMIVFSPAGKVFSF 62 56799*************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-31	6	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.717	6	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-27	7	90	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.49E-36	7	83	No hit	No description
PRINTS	PR00404	3.5E-18	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.6E-23	16	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-18	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-18	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MVKSNKGRQK IEMKKMRKEK NLQVTFSKRK FGLFKKASEL CTLCGAQILM IVFSPAGKVF 60 SFGHPSVREL IYRFQNFNHN SLIPHQPNNN LELAESRPDT NVQYLNEMLT HMLVKQEKAE 120 DTRMTLDRVK QSREQRGIRW YEKDVKELDV TETDNLIGAL QDVRKKLVSD MSHDSQLNVS 180 HQNYMGENAV FGGGGNVDVG GIDLFNPIMG FPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_B	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_I	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_J	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_A	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_B	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_C	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_D	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_I	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_J	1e-17	7	96	1	86	Myocyte-specific enhancer factor 2A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g004870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010451030.1	1e-159	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A178UZM5	1e-87	A0A178UZM5_ARATH; Uncharacterized protein
TrEMBL	O23222	1e-87	O23222_ARATH; MADS-box protein
STRING	XP_010451030.1	1e-159	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14294	10	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	5e-93	M-type_MADS family protein