PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g004890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26918.4 Da    PI: 9.269
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g004890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.2e-21347549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    n+ n qvtfskRr g++KKA+EL++LC+a++++i+fs+ gk++ +
  Csa12g004890.1  3 NENNLQVTFSKRRFGLFKKASELCTLCGAQILMIVFSPGGKVFSF 47
                    88999*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.395151IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-22150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23278IPR002100Transcription factor, MADS-box
PfamPF003193.9E-23247IPR002100Transcription factor, MADS-box
CDDcd002652.59E-31368No hitNo description
PRINTSPR004048.4E-101328IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-102849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRNENNLQVT FSKRRFGLFK KASELCTLCG AQILMIVFSP GGKVFSFGHP SVRELIYRFQ  60
NFHHNSLIPH QPNNNLQLVE SRPARNVQYL NEMLTHMLAK QEKAKHNRMT LDRVKQSREQ  120
RGIRWYEKDV KELDLTETDN LIGALQDVRT KLVSGMSHDS QLNVSHQNYM GETAVFGGGG  180
NVDVGGIDLF DQRMNTFNYN PIMGFPNQTP LVGYNNDGVS YNMNYMSSYN FNER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g004890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446775.11e-176PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A178UZM51e-101A0A178UZM5_ARATH; Uncharacterized protein
TrEMBLO232221e-101O23222_ARATH; MADS-box protein
STRINGXP_010446775.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-100M-type_MADS family protein