PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g004930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 244aa    MW: 28060.9 Da    PI: 8.0935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g004930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.3e-09152198555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++Y++sLq
  Csa12g004930.1 152 HSLAERARREKISKKMKCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 198
                     999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16145215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.47E-7145202No hitNo description
PROSITE profilePS5088814.634147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-17149216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDLSVLDRLK WLQQQQLVSP EFLHIIGSDG REELKRVETY LGNNNDELQS FRHFPEFGPD  60
YDTIDGCISR TSSFHMEPVK NNEDNRAIAL QNKRKPEGKT EKREKKKIKA EDETESSMKG  120
KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV  180
TGKAGMLDEI INYVQSLQQQ VEFLSMKLSV INPELESHID ELSAKQVIKL SFIPRINLVF  240
HIY*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g004930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087, ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3702310.0AF370231.1 Arabidopsis thaliana unknown protein (At4g36540) mRNA, complete cds.
GenBankAY0545880.0AY054588.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankAY0591220.0AY059122.1 Arabidopsis thaliana unknown protein (At4g36540) mRNA, complete cds.
GenBankBT0003880.0BT000388.1 Arabidopsis thaliana Unknown protein (At4g36540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089806.11e-168PREDICTED: transcription factor BEE 2 isoform X2
SwissprotQ93VJ41e-159BEE2_ARATH; Transcription factor BEE 2
TrEMBLR0F6F91e-157R0F6F9_9BRAS; Uncharacterized protein
STRINGXP_010446781.11e-167(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.21e-143BR enhanced expression 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]