PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g005160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 246aa    MW: 27396.6 Da    PI: 5.5079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g005160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18171205135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Csa12g005160.1 171 CSHCGVEKTPQWRMGPLGAKTLCNACGVRFKSGRL 205
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-841244IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-13165219IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-13165227No hitNo description
PROSITE profilePS5011411.53165201IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-14169203IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
CDDcd002025.23E-14171227No hitNo description
PfamPF003201.6E-16171205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MECVETFLGD FSVDDLLDLS NADTTSAFIR EESSSSQREE EDEQEQERDK GKGLSDKSTR  60
LSPLEDLLSF PSDDVSVGGD LEDLEWLSNF VEDSFSESYL SGDFSVSVEV QRQCVPVKPR  120
SKRRRTNGRV WSLESPSSLL PTAVAGKKKR GRQTEEASSV DGVKQQPRRC CSHCGVEKTP  180
QWRMGPLGAK TLCNACGVRF KSGRLLPEYR PACSPTFSTE IHSNSHRKVL ELRLMKTADP  240
VRVTR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g005160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446812.11e-179PREDICTED: GATA transcription factor 7-like
SwissprotO655151e-130GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A178UWZ01e-127A0A178UWZ0_ARATH; GATA transcription factor
STRINGXP_010446812.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-123GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]