PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g007950.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 381aa MW: 38063.7 Da PI: 4.5621

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g007950.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	218	239	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg++F ++ H+r H Csa12g007950.1 218 VCHICGRRFGSWKAVFGHMRAH 239 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	219	239	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MRNMTDKSEK TKAIDTDVER DESEEQWSDD DSDTREIVLG LPALSISSRV SGDIIVAERE 60 EDETRLNEQV EENEARLAVV AAGLVVAAAE EAVTKGKSDA GAGGSEARLN EQAVVAAGLV 120 VAAAEEAVTK GKSDAGAGGS EARLNEQAVV AAGLVVAAAE EAVMKGKSEE GGSGGKKKSR 180 PRTSTKTDDE ADGSSKGEAK KPKKKSSELT NPPKGPPVCH ICGRRFGSWK AVFGHMRAHK 240 DRNYQGFLPP PTFSAAAEVF TIPGKSSAFT LVTAGGGSSI AIASGGGSSG GVASGVGSSG 300 GVAGGVGSSG GVASGVGSSG VIASGGASGA SEGEGGRDVG IDLNVKAVED TEAASGSGTA 360 AKFDLNKSPP KEDEEEDKAE *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MRNMTDKSEK TKAIDTDVER DESEEQWSDD DSDTREIVLG LPALSISSRV SGDIIVAERE  60
EDETRLNEQV EENEARLAVV AAGLVVAAAE EAVTKGKSDA GAGGSEARLN EQAVVAAGLV  120
VAAAEEAVTK GKSDAGAGGS EARLNEQAVV AAGLVVAAAE EAVMKGKSEE GGSGGKKKSR  180
PRTSTKTDDE ADGSSKGEAK KPKKKSSELT NPPKGPPVCH ICGRRFGSWK AVFGHMRAHK  240
DRNYQGFLPP PTFSAAAEVF TIPGKSSAFT LVTAGGGSSI AIASGGGSSG GVASGVGSSG  300
GVAGGVGSSG GVASGVGSSG VIASGGASGA SEGEGGRDVG IDLNVKAVED TEAASGSGTA  360
AKFDLNKSPP KEDEEEDKAE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g007950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446906.1	0.0	PREDICTED: uncharacterized protein LOC104729644
TrEMBL	R0H2J1	1e-101	R0H2J1_9BRAS; Uncharacterized protein
STRING	XP_010446906.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35610.1	1e-37	C2H2 family protein