PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g008960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 524aa    MW: 59178.5 Da    PI: 6.0095
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g008960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083303671954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Csa12g008960.1 330 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 367
                     664459******************************88 PP
2BELL127.93.6e-41196267172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqe+q+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai++qi
  Csa12g008960.1 196 ERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQI 267
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-70130265IPR006563POX domain
PfamPF075261.7E-48139264IPR006563POX domain
PROSITE profilePS5007111.758308371IPR001356Homeobox domain
CDDcd000861.69E-10311372No hitNo description
SMARTSM003891.0E-8311375IPR001356Homeobox domain
SuperFamilySSF466891.5E-16312377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-26314376IPR009057Homeodomain-like
PfamPF059201.0E-17328367IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MENYPETQFL PGNAMIHMNA TVSYSQELAS RERTEANNNV SASQERSRFG QVSQMQDVDQ  60
DFGSWRDQAS DRNGFQLMNT MAHLHTGQGL SLSLGSQIHP GIHQSMAPRA EHFRGNEYAV  120
QSFPGGNQNL DVVRTINPNS KYLKAAQQLL DEAVNVRKAL KQFQAEGDKN NEKPHETDQN  180
TQDSNTNPPA EISQSERQEM QSKLTKLLSM LDEVDRRYKQ YYQQMQIVVS SFDVIAGYGA  240
AKPYTALALQ TISRHFRSLR DAISGQILVI RKCLGEQQDG SDGKRVGIIS RLKYVDQHLR  300
QQRGFMQPQA WRPQRGLPEN SVLILRAWLF EHFLHPYPKD SDKIMLARQT GLSRGQVSNW  360
FINARVRLWK PMVEEIYKEE FTENDSNSSS ENTPKRLAAA DDDEDRDQEF SQDQTKQDHG  420
YGDETGGMVQ GSQMDGRRFM AVEPTYHVAE MSRLGRGDVS LTLGLQNSNG HDNVTVMSSE  480
AYNNFSGVDI YETAIPGAEL EYVNPGSRQN RISSSQLVHD FVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14317375563Homeobox protein Meis2
3k2a_B1e-14317375563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g008960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0122910.0BT012291.1 Arabidopsis thaliana At4g34610 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447052.10.0PREDICTED: BEL1-like homeodomain protein 6
RefseqXP_019089823.10.0PREDICTED: BEL1-like homeodomain protein 6
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLR0F3V10.0R0F3V1_9BRAS; Uncharacterized protein
STRINGXP_010447052.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]