PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g011380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 257aa    MW: 29553.9 Da    PI: 10.2851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g011380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-162570147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed+ l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
   Csa12g011380.1 25 RGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 70
                     899****************************9.************96 PP
2Myb_DNA-binding56.37.5e-1877120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++++k++++ 
   Csa12g011380.1  77 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNSVKNHFHV 120
                      689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4872075IPR017930Myb domain
SuperFamilySSF466895.24E-2923118IPR009057Homeodomain-like
SMARTSM007173.4E-142473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-252678IPR009057Homeodomain-like
CDDcd001673.99E-132869No hitNo description
PfamPF139211.3E-162888No hitNo description
SMARTSM007177.2E-1576124IPR001005SANT/Myb domain
PROSITE profilePS5129418.60976126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2079124IPR009057Homeodomain-like
CDDcd001674.27E-1179119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEIASMEMSR GSNSFDNNKK PSCQRGHWRP VEDDNLRQLV EQYGPKNWNF IAQHLYGRSG  60
KSCRLRWYNQ LDPNITKKPF TEEEEERLLK AHRIQGNRWA SIARLFPGRT DNSVKNHFHV  120
IMARRKRENL SSTATSTLSQ TWHNVLSPSS SVTRLNRSQF GLWRYQKDKR RGLWPCSFVP  180
SPGNDQFGSS SVSNVRHEVF LERRTSKELV DHHNHTFHEA TPDNNKTSGE DGPSKENDVG  240
KNNVTFIDFL GVGLTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-34211253107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g011380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1425170.0AY142517.1 Arabidopsis thaliana putative transcription factor (At4g33450) mRNA, complete cds.
GenBankAY5196110.0AY519611.1 Arabidopsis thaliana MYB transcription factor (At4g33450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447240.10.0PREDICTED: myb-related protein A-like
TrEMBLR0GN171e-166R0GN17_9BRAS; Uncharacterized protein
STRINGXP_010447240.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-153myb domain protein 69