PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g013120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 328aa    MW: 35919.3 Da    PI: 4.2163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g013120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-171767155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+ +++g
  Csa12g013120.1 17 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAAMSIKG 67
                    68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-111767IPR001471AP2/ERF domain
SMARTSM003808.8E-341881IPR001471AP2/ERF domain
PROSITE profilePS5103222.6031875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-301876IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-201875IPR016177DNA-binding domain
CDDcd000189.93E-311977No hitNo description
PRINTSPR003671.0E-91930IPR001471AP2/ERF domain
PRINTSPR003671.0E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADSSSDKEK KESSKQPVYR GVRMRSWGKW VSEIREPRKK SRIWLGTFPT AEMAMRAHDV  60
AAMSIKGTSA ILNFPELSDF LPKPVSLSPR DVRAAATKAA FMDFDTTPLR SETNKRSGTG  120
ETTSNKRSES SSSSVSSETV SFSVTSIEES AVSDDLDEIV ELPSLGTTSL NESNEFVVFD  180
SLEELVYMPL WLSAAFMDFD TTPLRSETSE TKRSETGETT SNKRSESSSS SVSSETVSFS  240
SSSFSVTSIE ESAVSDDLDE IVELPSLGTT SLNESNEFVV FDSLEELVYM PPWLSGTDTD  300
DFTYNNNGSS SSSSLNSSVF ESWKHFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1819761573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g013120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615821e-124AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78.
GenBankAY0889181e-124AY088918.1 Arabidopsis thaliana clone 99612 mRNA, complete sequence.
GenBankBT0029241e-124BT002924.1 Arabidopsis thaliana clone RAFL14-88-G18 (R20108) putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankBT0043431e-124BT004343.1 Arabidopsis thaliana clone U20108 putative transcription factor TINY (At4g32800) mRNA, complete cds.
GenBankCP0026871e-124CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437852.11e-120PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0802e-98ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLR0GTR81e-100R0GTR8_9BRAS; Uncharacterized protein
STRINGXP_010437852.11e-119(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.14e-83ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]