PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g013850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 231aa    MW: 26044 Da    PI: 9.4349
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g013850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind56.29.7e-18231162101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F  +ly+i++d++++++isw e+g+sf+++d++ef+++vL k     +f+ F   L+ +gF++v++e++         e++++ F +g+ +   +
  Csa12g013850.1  23 FPCELYKIVNDPKTNSVISWGEEGKSFIIWDPQEFSRDVLFKALYLLSFSLFETRLKSFGFRRVESESAA------HFEYANDDFVRGEPKRALE 111
                     7789**************************************************************9977......89*************9999 PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+++ 
  Csa12g013850.1 112 IQKRY 116
                     99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-1519115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-2122115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.01E-1722109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-52346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-1823115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-57486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGNNGYAFEH PPLKKLGPRR RYFPCELYKI VNDPKTNSVI SWGEEGKSFI IWDPQEFSRD  60
VLFKALYLLS FSLFETRLKS FGFRRVESES AAHFEYANDD FVRGEPKRAL EIQKRYMQPF  120
GPASPAYKPI LIEPAALEAL MSKPPSVSLL PPGTLGPMPS LQDPVALKAY FNDAWYRVVA  180
MPKDPLSARE KELAASLMHG LKDEIMRRRA SVMEALANAS GPSRERDTTL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g013850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447430.11e-169PREDICTED: heat stress transcription factor B-2b-like
TrEMBLD7MB832e-59D7MB83_ARALL; Uncharacterized protein
STRINGXP_010447429.11e-168(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2100235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.15e-21HSF family protein