PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g014390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 425aa    MW: 47989 Da    PI: 9.33
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g014390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.9e-16241001497
                     T-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + l++p kf++ +  g   +e+kt  l++  s  sW+v++  ++++    lt GWkeF+ a++L++gD++vF++dg s f  +v+ f
  Csa12g014390.1  24 SYLTIPVKFFSVYleGR--NEGKTAELRSdASEISWKVEM--EGQR----LTVGWKEFATAHDLRVGDVIVFRHDGASVF--HVTCF 100
                     459*******9998544..46678888876889*******..8877....************************999999..88776 PP
2B364.81.3e-20178273294
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f +l++ ++ +++ + lpk+f ++ ++ k +s +++l+de      ++W++ l++r++sg++++++GW++F+++++Lk gD+v+Fkl++++ +++
  Csa12g014390.1 178 FVALVSDSNIRRDTMFLPKRFYDSGSLTK-GSNQIVLMDEGMvegvKTWTLFLKFRNSSGTFYMRGGWRSFCHEKELKPGDTVTFKLESKNMKRP 271
                     5678899999************7777665.6779*****9999********************************************98755546 PP

                     EE CS
              B3  93 vv 94 
                     ++
  Csa12g014390.1 272 LL 273
                     55 PP
3B362.66.3e-20315413198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f++ + +++ lk+g l+lp kf++ +g+++ e k++tl d++g++W v+l ++k+  ++ l+ G keF kang+k+++++vF+l+++ +++ + +
  Csa12g014390.1 315 FVTLTPTPYGLKNGKLRLPVKFIKVNGMENLERKKMTLLDKHGKKWPVNLVMEKGNTQTRLGLGLKEFFKANGIKANESLVFELVWEdKTTLPIL 409
                     566677899*****************9999999****************************************************9977777777 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++++
  Csa12g014390.1 410 QLCS 413
                     7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-229105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-219108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.33711103IPR003340B3 DNA binding domain
CDDcd100171.62E-1612100No hitNo description
SMARTSM010191.9E-2114103IPR003340B3 DNA binding domain
PfamPF023629.2E-112597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-18169272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-18173274IPR015300DNA-binding pseudobarrel domain
CDDcd100172.52E-19175269No hitNo description
PROSITE profilePS5086314.917177278IPR003340B3 DNA binding domain
PfamPF023623.8E-18178272IPR003340B3 DNA binding domain
SMARTSM010192.5E-18178279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-17313409IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.943315414IPR003340B3 DNA binding domain
PfamPF023621.9E-19315414IPR003340B3 DNA binding domain
SMARTSM010193.8E-23315415IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-17315409IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-17315402No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MADPVLQPPT NPHFFQPLLP GFDSYLTIPV KFFSVYLEGR NEGKTAELRS DASEISWKVE  60
MEGQRLTVGW KEFATAHDLR VGDVIVFRHD GASVFHVTCF GPSCCEIQHV QSCDDNDDDD  120
DEQENIRNLS MKQSLKTEPE SSLDEDKDYM GKLPRKKHVK KRIPEAKAKS FSSDPSCFVA  180
LVSDSNIRRD TMFLPKRFYD SGSLTKGSNQ IVLMDEGMVE GVKTWTLFLK FRNSSGTFYM  240
RGGWRSFCHE KELKPGDTVT FKLESKNMKR PLLRFSTAEL KRVSTKDCNK GKRNKSGDSS  300
EKVPSSPSSV SEGRFVTLTP TPYGLKNGKL RLPVKFIKVN GMENLERKKM TLLDKHGKKW  360
PVNLVMEKGN TQTRLGLGLK EFFKANGIKA NESLVFELVW EDKTTLPILQ LCSNTKTCPV  420
IVNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g014390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447527.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM7-like
SwissprotQ8H2D01e-127REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A178UT081e-180A0A178UT08_ARATH; Uncharacterized protein
STRINGCagra.3807s0035.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.11e-128B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]