PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g015860.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 314aa MW: 36021.6 Da PI: 5.1253

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g015860.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.7	5.4e-12	38	116	2	80
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt +e l L++ +e++ +++ + ++W +s+++ + ++r+ +qC+ kw++l +y ik++e++ + ++s ++ Csa12g015860.1 38 WTVKECLILVNEIAAVESDCSNALSSFQKWTMISENCNALDVRRTLNQCRRKWDSLLSDYNLIKQWESRYQGSARSYWS 116 ********************************************************************98766666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-4	37	95	IPR009057	Homeodomain-like
Pfam	PF13837	1.1E-9	37	116	No hit	No description
PROSITE profile	PS50090	6.992	38	94	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MHLDSCFEFR VRFLSFCYRM DEGTSGSRRL RSQVAPDWTV KECLILVNEI AAVESDCSNA 60 LSSFQKWTMI SENCNALDVR RTLNQCRRKW DSLLSDYNLI KQWESRYQGS ARSYWSLSVE 120 KRKLLNLPGT VDNEIFEAVS AVVMIQDDKA GTESDSDPEE DDVVDITAAY VGSKRSRQRA 180 TVTKEIPPQK TKIQEPRRYR VQEYTQQKPT KAAHPHQNKT MEEKKKKPAE EISTDEEEEE 240 PMNIEEDVEV TEAKLSYKID LIHAIVGRNL AKDNETGDDI SIKDKLKYVK QQGDELIACL 300 SEIVKTLGRL REV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	178	KRSRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g015860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010447592.1	0.0	PREDICTED: trihelix transcription factor ASR3-like isoform X1
TrEMBL	R0GXI9	1e-164	R0GXI9_9BRAS; Uncharacterized protein
STRING	XP_010447592.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-135	sequence-specific DNA binding transcription factors