PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g020610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 377aa    MW: 41526 Da    PI: 10.0392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g020610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-15217264355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++hn  ErrRR++iN+++ +L+el+P +      K +Ka++L  ++eY+ks q
  Csa12g020610.1 217 EMHNLSERRRREKINEKLKTLQELIPGC-----SKKDKASTLDSVIEYVKSVQ 264
                     58*************************9.....799**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17212276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.314214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-13217264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-15217268No hitNo description
Gene3DG3DSA:4.10.280.102.2E-19218273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
IRGEDDIVEL LWKSGQVVPS SHQTQRPSSG PLPILRGSGS GEGNAPLPQP TPPLHHHLFN  60
QEDEMASWLH HPNRQDYFYS GVTSTPATLP QRSSASMAPP GPPPPSSQYI MMPERPTRQV  120
LAARRADNFM NFSSLRGNIF TGGRDEAGPS MQMSSSATPS SFAIGSCVIP ATTEGTKSRV  180
SPTFTVPSRR NETVAIETTE TPEARGSNSR KRSRAAEMHN LSERRRREKI NEKLKTLQEL  240
IPGCSKKDKA STLDSVIEYV KSVQMKEQMK SMGQGMVPST MSAENTPQLM PHMRMMDMNR  300
PPPLIPFSGT PFPRPPPIAG VGSSCPAPRY PNDPSRVHLQ SPQPNPVSNQ PQFPTYMNPY  360
SQFVGFHQMQ QPPSSLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209226RKRSRAAEMHNLSERRRR
2222227ERRRRE
3223228RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g020610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089039.10.0PREDICTED: transcription factor bHLH127-like
SwissprotQ9SVU71e-132BH056_ARATH; Putative transcription factor bHLH056
TrEMBLR0H4M41e-167R0H4M4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010447914.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-98bHLH family protein