PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g023460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 240aa    MW: 26433.3 Da    PI: 9.6365
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g023460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.98.7e-3257854128
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
  Csa12g023460.1   5 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITS-DGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 78 
                     579**********************************9999.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.4441101IPR003441NAC domain
SuperFamilySSF1019411.7E-423101IPR003441NAC domain
PfamPF023658.9E-15878IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
KALFGEKEWY FFSPRDRKYP NGSRPNRVAG SGYWKATGTD KIITSDGRRV GIKKALVFYA  60
GKAPKGTKTN WIMHEYRLIE HSRSHGSSKL DDWVLCRIYK KTSGSQRQAV AATTPVQACR  120
EEHSTNGSSS SSSSQLDDVL DSFPEIKDQS FHLPRMNSLR TLLNGNFDWA SLAGLNPIPE  180
LAPTNGLPSY GGYDSFRAAE GEAESGLRNS HVDNSGGLTQ SFGYSSSGFG VSGQTFEFRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-66110768174NAC domain-containing protein 19
3swm_B5e-66110768174NAC domain-containing protein 19
3swm_C5e-66110768174NAC domain-containing protein 19
3swm_D5e-66110768174NAC domain-containing protein 19
3swp_A5e-66110768174NAC domain-containing protein 19
3swp_B5e-66110768174NAC domain-containing protein 19
3swp_C5e-66110768174NAC domain-containing protein 19
3swp_D5e-66110768174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g023460.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0837380.0AF083738.1 Arabidopsis thaliana clone sps433 unknown mRNA.
GenBankAY0877720.0AY087772.1 Arabidopsis thaliana clone 38344 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448140.11e-177PREDICTED: NAC domain-containing protein 72
SwissprotQ93VY31e-159NAC72_ARATH; NAC domain-containing protein 72
TrEMBLA0A0A1EIC11e-157A0A0A1EIC1_OLIPU; NAC026
STRINGXP_010448140.11e-177(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14352795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-149NAC family protein
Publications ? help Back to Top
  1. Zhu X, et al.
    Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.
    Plant J., 2015. 84(3): p. 597-610
    [PMID:26407000]
  2. Li S, et al.
    The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence.
    Plant Cell Rep., 2016. 35(8): p. 1729-41
    [PMID:27154758]
  3. Ye H, et al.
    RD26 mediates crosstalk between drought and brassinosteroid signalling pathways.
    Nat Commun, 2017. 8: p. 14573
    [PMID:28233777]