PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g025230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 564aa    MW: 61765.6 Da    PI: 7.8619
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g025230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31214271260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  Csa12g025230.1 214 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 271
                     8****************************************.***************85 PP
2WRKY106.81.1e-33385443159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Csa12g025230.1 385 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 443
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.388208272IPR003657WRKY domain
SuperFamilySSF1182907.85E-25211272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-27212272IPR003657WRKY domain
SMARTSM007748.5E-34213271IPR003657WRKY domain
PfamPF031062.5E-24214270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37370445IPR003657WRKY domain
SuperFamilySSF1182902.35E-29377445IPR003657WRKY domain
PROSITE profilePS5081138.825380445IPR003657WRKY domain
SMARTSM007747.7E-39385444IPR003657WRKY domain
PfamPF031064.1E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MNPQLNDTKG FHQVDRSVTG DLAARHDSAG GGGNGGGGAR YKLMSPAKLP ISRSTDITVP  60
PGLSPTSFLE SPVFISNIKP EPSPTTGSLF KPRPVHISAS SSSYTGRAFH QNTFTEQRSS  120
EFEFRPPASN MVYAELGKHR SEPPVQFQGQ GHGSSHSPSS ISDAAGSSSE LSRPTPPRQM  180
TSTSSDIPAG SDQDESIQTS QNDSRGSTPS ILADDGYNWR KYGQKHVKGS EFPRSYYKCT  240
HPNCEVKKLF ERSHDGQITD IIYKGTHDHP KPQPGRRNSG GLGMAAQDER LDKYPSSTGR  300
EEKGSGVYNL SHPNEQPGNP EIPPITATDD GGEAAASNRN KDDPEDDDPF SKRRRMDTAM  360
EITPLVKPIR EPRVVVQTLS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTAAGCPVRK  420
HVERASHDPK AVITTYEGKH NHDVPTSKSS SNHDIQPRFR PDETDTISLN LGVGISSDGP  480
NHTSNEHQHQ NQQLVNQTHP NGVNFRFVHA NHPMPSYYAS LNSGMNQYGP RETKNETQNG  540
DISSLNHSSY PYPPNIGRIQ SGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36212445877Probable WRKY transcription factor 4
2lex_A1e-36212445877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g025230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4258370.0AF425837.1 Arabidopsis thaliana WRKY transcription factor 20 (WRKY20) mRNA, complete cds.
GenBankAJ6304790.0AJ630479.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g26640D.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448235.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GYJ60.0R0GYJ6_9BRAS; Uncharacterized protein
STRINGXP_010448235.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein