PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g025380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 222aa    MW: 25669.5 Da    PI: 8.6404
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g025380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.44.9e-0899123426
                     ---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartG..tCkyGdrCkFaHg 26 
                     e C+ ++r G   C++Gd+C FaHg
  Csa12g025380.1  99 EVCPEYSRQGggDCSRGDQCGFAHG 123
                     78**********************9 PP
2zf-CCCH24.44.9e-08174198426
                     ---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartG..tCkyGdrCkFaHg 26 
                     e C+ ++r G   C++Gd+C FaHg
  Csa12g025380.1 174 EVCPEYSRQGggDCSRGDQCGFAHG 198
                     78**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF146083.67682No hitNo description
SMARTSM003560.003795124IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-599123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-499125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.197100125IPR000571Zinc finger, CCCH-type
SMARTSM003562.5133156IPR000571Zinc finger, CCCH-type
PfamPF146080.17139154No hitNo description
SMARTSM003560.0037170199IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5174198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4174200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.197175200IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDVGHINRPT VDILPRKLLS SAKSPSSVSS PLRDYKDQRD YSYDSDSEDP YAGDHFRMYE  60
FKIRRCTRSR SHDWTDCPFS HPGEKARRRD PRRFHYIGEV CPEYSRQGGG DCSRGDQCGF  120
AHGVFECWLH PSRYRTEACK DGKHCKRKVC FFAHSPRQLR ILXRDPRRFH YIGEVCPEYS  180
RQGGGDCSRG DQCGFAHGVF ECWLHPSRYR TEACKALLSL T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g025380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114751e-157AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2.
GenBankAY0349161e-157AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankAY1425421e-157AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds.
GenBankCP0026881e-157CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451167.11e-161PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW22e-95C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLD7MMK22e-94D7MMK2_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010451167.11e-161(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.13e-74C3H family protein