PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g025570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 514aa    MW: 56100.2 Da    PI: 6.1659
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g025570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32141198260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y g+Hnh+k
  Csa12g025570.1 141 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHIIEIIYAGSHNHPK 198
                     8****************************************.***************85 PP
2WRKY98.44.4e-31318375158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k+ver ++d k v +tY g+H+h
  Csa12g025570.1 318 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCAVTKHVERVSDDFKSVLTTYIGKHTH 375
                     59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.294135199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-29136199IPR003657WRKY domain
SuperFamilySSF1182905.23E-26138199IPR003657WRKY domain
SMARTSM007742.3E-35140198IPR003657WRKY domain
PfamPF031064.7E-25141197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-33303378IPR003657WRKY domain
SuperFamilySSF1182901.96E-27310378IPR003657WRKY domain
PROSITE profilePS5081134.211313378IPR003657WRKY domain
SMARTSM007746.2E-35318377IPR003657WRKY domain
PfamPF031069.5E-24319375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MADSMQTSFH KTPGYSGGAL RERIEARSGF SAPSLNTEDI FQSTCLTISS PGVSPATLLE  60
SPVFLSNPLP SPTTGKFLSL PSDKAKDELF DDITTSLAFQ SISGSSLDPT NIGLEPDDSQ  120
DYEKRQLGGL GDSMASGAPA DDGYNWRKYG QKLVKGSEYP RSYYKCTHPN CEVKKKVERS  180
REGHIIEIIY AGSHNHPKPP PNRRSGIGTE QEGFAGTNEN IDWTSPVSEY GSHSRSMQVK  240
SETQFGYSDA AADAFFRDEE EDDRTSHMSV SLSYEGEEDE SESKRRKLEA YPAEMSGSTR  300
ASREPRVVVQ TTSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTANGCA VTKHVERVSD  360
DFKSVLTTYI GKHTHVVPAA RNSSLVGSGS SGTLQGGLAT QTRNHNVHYP VPHSRSEVVR  420
ANSSLFDLPP HLKPPSGFSV YIGQSELSDF SMPGLTIGQE KLPNQPTPDI GDPAGLMLQL  480
KAEPKVEPVS QQGLGLSASS LIYREIMSRL PQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-31141379878Probable WRKY transcription factor 4
2lex_A4e-31141379878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g025570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526490.0AY052649.1 Arabidopsis thaliana WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
GenBankBT0303610.0BT030361.1 Arabidopsis thaliana At4g26440 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088951.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLR0FAT40.0R0FAT4_9BRAS; Uncharacterized protein
STRINGXP_010448274.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]