PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g027810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 222aa    MW: 24609.8 Da    PI: 7.078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g027810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.7e-104493253
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                    +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  Csa12g027810.1 44 KLLHRDIERQRRQEMATLFAALRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 93
                    6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.49E-1239113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.65E-94093No hitNo description
PROSITE profilePS5088811.8394294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-744112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDPSQNLNPK GYQRQRPFSS AGEGGSSGGS GMPQETDDNK KQKKLLHRDI ERQRRQEMAT  60
LFAALRTHLP LQYIKGKRAV SDHVNGAVNF IKDTETRIKE LSARRDELIK ETGQKYQSNP  120
DPARTESDLP KSDPATVMVQ PHVSGLEVVV SSNSSGPEAL LLSRVLETLQ EKGLEVVSSL  180
TTRVNERLMH TIQVEVNSFG CIDLAWLQEK LVEDLILSTG Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g027810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937000.0AB493700.1 Arabidopsis thaliana At4g25410 mRNA for hypothetical protein, partial cds, clone: RAAt4g25410.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448439.11e-163PREDICTED: transcription factor bHLH126-like isoform X2
SwissprotQ9STJ61e-126BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A178URA11e-124A0A178URA1_ARATH; Uncharacterized protein
TrEMBLD7MG081e-124D7MG08_ARALL; Basix helix-loop-helix family protein
STRINGXP_010448437.11e-162(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-128bHLH family protein